Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01820 ATGGAAAATATCTTGATTCCAGCTTTTCTCTTTTTCATTCTTCATTTAAGTTTTACAAAAGCTGCTTttggtgtaggtgttagtggtggtgttggtgtaggtgttggtgttggtgttggaaatgatggtagtggtagagttgTTTGGATTGGAGGAGGATTTAACAACCCAAAATCCTATGGATCTCCAATATCAAAGATGGATTCAGCTTATACAGCTCTTCAAGCCTGGAAATCTGCAATCACTGATGACCCTTTAAAGATTTTAGCTTCTTGGGTTGGTTCAAATGTGTGTTCTTACAAAGGAGTTTTCTGTGCAAATCTTGAAGATGATGGAATGTcttcatcttcttcttctgctactgctgctgcatcagcttctAGTTCAGTAGTTGTTGCAGGCATAGATCTAAACCATGCAAATCTTCAAGGAACTCTTGTAAAAGAGCTATCTTTACTCACTGATATGTCACTACTTCACCTCAACAGTAACAGATTTTCTGGTACAGTACCTGATACATTCAAAGACCTTGTTTCTCTTGAAGAATTAGATATAAGCAATAATCAACTTTCAGGTTCTTTCCCTTTGGTTACTTTGTACATGCCAAGTTTAATATACTTGGACATTAGATTCAACTTTTTCTCAGGTTCATTACCTCGAGAGATATTCGACAAGAATCTTGATGCTATATTTCTCAACAACAATCGATTCGAAGGCGAAATACCTCAGAATTTAGGTAACTCACCTGCATCAGTGATAAACTTAGCTAATAACAGATTGAGTGGAAACATTCCAGCTAGTTTTGGTTTCATGGGGTCTAAGATAAAAGAAATTTTGTTTCTGAATAACCAGTTAACTGGTTGTATTCCAGAAGGAGTTGGATTGTTTACAGAGATGGAAGTTCTTGATGTTAGCTTCAATGCATTAATGGGTCATTTGCCAGATACATTATCTTGCTTACAAAACATTGAAGTTTTGAACTTGGCACATAATCAGCTTTCTGGAGAGTTATCAGATATAATATGTTCTCTGAGAAGCTTGGCAAATTTAACTGTTGCTTATAATTTCTTTTCTGGGTTTAGTCAACAATGTTCAAAACTTTTCTTTAGGAATGTTGGTTTTGATTTCTCACTTAATTGTATTCCTGGGAGGGACATGCAGAGACCTCAACCAGAATGTTCCATGATCCCAGGTAGTAGTTTAAGTTGTCTCAGAATTCCAACACCAAAACCTCTTGTTTGTGGTTCTTTGTCTGTAAGTAACTCAAAGCACACTGATCCCACTtcacaatcacagtcacagtcacattcacaatcTCCTTGA 1323 0.3182 MENILIPAFLFFILHLSFTKAAFGVGVSGGVGVGVGVGVGNDGSGRVVWIGGGFNNPKSYGSPISKMDSAYTALQAWKSAITDDPLKILASWVGSNVCSYKGVFCANLEDDGMSSSSSSATAAASASSSVVVAGIDLNHANLQGTLVKELSLLTDMSLLHLNSNRFSGTVPDTFKDLVSLEELDISNNQLSGSFPLVTLYMPSLIYLDIRFNFFSGSLPREIFDKNLDAIFLNNNRFEGEIPQNLGNSPASVINLANNRLSGNIPASFGFMGSKIKEILFLNNQLTGCIPEGVGLFTEMEVLDVSFNALMGHLPDTLSCLQNIEVLNLAHNQLSGELSDIICSLRSLANLTVAYNFFSGFSQQCSKLFFRNVGFDFSLNCIPGRDMQRPQPECSMIPGSSLSCLRIPTPKPLVCGSLSVSNSKHTDPTSQSQSQSHSQSP 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01820 440 Gene3D Ribonuclease Inhibitor 68 248 IPR032675 -
Car08g01820 440 PRINTS Leucine-rich repeat signature 180 193 - -
Car08g01820 440 PRINTS Leucine-rich repeat signature 320 333 - -
Car08g01820 440 Gene3D Ribonuclease Inhibitor 249 371 IPR032675 -
Car08g01820 440 PANTHER LRR/EXTENSIN 1 431 - -
Car08g01820 440 MobiDBLite consensus disorder prediction 419 440 - -
Car08g01820 440 Pfam Leucine rich repeat N-terminal domain 69 105 IPR013210 -
Car08g01820 440 SUPERFAMILY L domain-like 71 366 - -
Car08g01820 440 Pfam Leucine rich repeat 158 212 IPR001611 GO:0005515
Car08g01820 440 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01820 Car-Chr8 28234062 28235765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01820 66 394 Leucine-rich Repeat extension Gene Families AT3G24480 49.544 4.12e-105 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01820 - - gsj:114407518 650.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01820 08 28234062 28235765 Car08g01820 08 28234062 28235765 ECH