LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car08g01809	ATGGGGAACAAAATCGCGCGCACAACGCAAGTTTCAGCGTCGGAGTATTACCTACAGGATTTACCGTCGACGTATAATCTGGTTCTGAAAGAAGTTCTTGGACGCGGTCGTTTCTTCAAGTCCATTCAGTGTAAACACGACGAAGGTTTGGTTCTCGTCAAGGTTTATTTCAAACGTGGCAATTTCATCAATCTCTCTGATTATGAACGACGTCTTTCTCAGATCAAAGATATTTTCAGTAACATCGATCATCCTCACGTTTGGCCttttcagTTTTGGCAAGAAACAGATAAAGCAGCTTATCTTTTGAGGCAATATTTCTTCCATAATTTAGATGATCGATTAAGTACTCGCCCTTTTCTTAGTTTCGTTGAGAAGAAATGGTTGGCTTTTCAGTTGCTTTTAGCTGTAAAACAGAGCCACGAGAAGGGAGTGTGTCATGGCGATATCAAGTGTGAAAATGTGCTAATTACATCATCGAATTGGCTTTACCTTGCTGACTTTGCCTCTTTCAAACCCACTTACATTCCGGATGATGACCCATCTGATTTCTCTTTTTTCTTTGACACGAGTGGCAGAAGACTCTGCTATCTGGCACCTGAGAGGTTTTATGAACATGGAGGGGAGATGCAGGTGGCACAAGATTCCCCCCTAAAGCCATCAATGGATCTATTTGCTGTCGGGTGTGTTATTGCTGAACTTTTCCTTGACGGGCAACCACTATTTGAACTGTCTCAACTTCTTGCATATCGCAGAAGACAACATGATCCAAGTCAACATCTTGAAAAAATACCAGATATTGGAATCCGTAAGATGATTCAACACATGATTCAGTTAGAACCAAAGTCCCGATTTTCTGCTGAAAAATACCTAAAGGAATATGCTGGAGTTGTATTCCCTTCCTATTTTTCACGATTTCTGCATGATTTTTACTGTTGCTGGAGTCCTCTCCATTCTGATATGAGGGTTTTACTATGCCAGAGTGCTTTCCAGGAAATACTTAAGCAAATGATGAACAAGCAGTCATCTAATGATGCAGGTGTTACTTCTAGAAAACTTTTGGAAGAGATCGTTGCCAAAGAAAGCGCGAGTTTCATGAAGGACTCACAAAGGAAAAGAGAGGACTTAGGCAAAGGGTTACTAAGGGATGCTAAAAATAACAATAAGAATCCATCTGGTCCTCAGCCAGTAATAGGAAATGCACAAAATTCTACCTTCCCTGAAAATCTAAAAAGTTTGCAGTCTCCTGGTGAGCTGCTTCAAACTATCTCCAATGCATTTCGAGGAAATGATCATCCCTTTTTGAAAAGTATTACTATGGACAACTTAAATTCGTTGATGTTAGAGTATGATAGTCAGTCAGATACATTTGGAACTCCTTTTCTACCATTACCAAGGGATAGTATGAGATGTGAAGGCATGGTTTTGATAACTTCTTTGCTCTGCTCCTGCATACGCAATGTCAAGTTGCCTCGCCTGAGGAGGGCAGCTGTACTCTTGTTGAAGGCTTCTGCCCTATATATTGACGATGAAGATCGTTTGCAGCGTGTTATCCCATATGTGATTTCAATGCTTTCTGAACCATCAGCAATTGTGCGTTGTGCTGCTTTGGAGACTTTGTGTGACATTCTTGCCTTAGTGCGTGATTTTCCTCCCAGTGATGCAAAGATATTTCCCGAGTATATTCTTCCAATGCTTTCTATGCTTCCCGATGATCCTGAGGAAAGTGTGCGGATATGCTATGCCAGCAATATAGCTAAGCTGGCACTCACTGCTTATGGCTTTTTGATACACTCAATAAGCTTGAGTGAGGCAGGTGTCCTTGAGAAACTGAGTTTGCCACGGAAGCCATCGACATCATCTTCTCAGACCTCTGAGAGAATGAAGATGATAAATAGTGATGTCCAGCTTCTGCATCTGAGGAAATCAATTGCAGAGGTTGTTCAAGAACTTGTTATGGGTCCAAAGCAAACACCAAATATTAGGAGAGCAATTCTTCAGGACATCGGTAAACTTTGCTACTTCTTTGGTGTGAGACAAAGTAATGACATTCTCTTACCTATCCTTCCTGCCTTCTTAAATGACCAAGATGAGCAAGTAAGGACAGTATTCTACGAAAAGATTGTTTATGTATGCTTTTTTGTGGGCCAAAGAAGTGTAGAGGAATATCTATTACCTTACATTGAGCAAGCTTTAAGTGACGCAACAGAAGCTGTCATTGTTAGAGCCTTAGAATGTTTGACTTTTCTATGCAAAAGCGGTTTCTTGCGGAAGACGATATTGCTTCAAATGTTCGAGCGTGCCTTTCCTTTATTGTGTAATCCTAGTAAATGGGTACGAAGATCAGTTGTCTCTTTCATTGCTGCTTGCAGCAAAAGCCTGGGTAAAGTGGATTCTGATGCTTTCCTTGCTCGTGTTATACGTCCTTTCATTAGTAGACGGCCTGTGCCTCTTGCTTCCGATAAAGATCTTCttagaatattagaaaatatcttataa	2499	0.4066	MGNKIARTTQVSASEYYLQDLPSTYNLVLKEVLGRGRFFKSIQCKHDEGLVLVKVYFKRGNFINLSDYERRLSQIKDIFSNIDHPHVWPFQFWQETDKAAYLLRQYFFHNLDDRLSTRPFLSFVEKKWLAFQLLLAVKQSHEKGVCHGDIKCENVLITSSNWLYLADFASFKPTYIPDDDPSDFSFFFDTSGRRLCYLAPERFYEHGGEMQVAQDSPLKPSMDLFAVGCVIAELFLDGQPLFELSQLLAYRRRQHDPSQHLEKIPDIGIRKMIQHMIQLEPKSRFSAEKYLKEYAGVVFPSYFSRFLHDFYCCWSPLHSDMRVLLCQSAFQEILKQMMNKQSSNDAGVTSRKLLEEIVAKESASFMKDSQRKREDLGKGLLRDAKNNNKNPSGPQPVIGNAQNSTFPENLKSLQSPGELLQTISNAFRGNDHPFLKSITMDNLNSLMLEYDSQSDTFGTPFLPLPRDSMRCEGMVLITSLLCSCIRNVKLPRLRRAAVLLLKASALYIDDEDRLQRVIPYVISMLSEPSAIVRCAALETLCDILALVRDFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLIHSISLSEAGVLEKLSLPRKPSTSSSQTSERMKMINSDVQLLHLRKSIAEVVQELVMGPKQTPNIRRAILQDIGKLCYFFGVRQSNDILLPILPAFLNDQDEQVRTVFYEKIVYVCFFVGQRSVEEYLLPYIEQALSDATEAVIVRALECLTFLCKSGFLRKTILLQMFERAFPLLCNPSKWVRRSVVSFIAACSKSLGKVDSDAFLARVIRPFISRRPVPLASDKDLLRILENIL	832

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car08g01809	832	CDD	STKc_Vps15	16	303	-	-
	Car08g01809	832	MobiDBLite	consensus disorder prediction	381	409	-	-
	Car08g01809	832	ProSiteProfiles	Protein kinase domain profile.	27	311	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car08g01809	832	Pfam	Protein kinase domain	29	292	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car08g01809	832	ProSiteProfiles	HEAT repeat profile.	685	723	IPR021133	-
	Car08g01809	832	SUPERFAMILY	ARM repeat	411	797	IPR016024	-
	Car08g01809	832	Gene3D	Transferase(Phosphotransferase) domain 1	22	375	-	-
	Car08g01809	832	SMART	serkin_6	27	303	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car08g01809	832	Gene3D	-	656	823	IPR011989	-
	Car08g01809	832	Gene3D	-	467	611	IPR011989	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Car08g01809	Car-Chr8	28141827	28146959	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car08g01809	23	252	AGC Kinase Gene Family	AT5G04510	23.207	3.83e-13	69.3

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_Pl-Tthe	Car08g01809		Pkinase	4.4e-22	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car08g01809	K08333		-	gmx:100818467	1382.08

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