Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01806 ATGTCAAACTATGATTACATTTTCAGCGTGTTAGTAGTTCTTCTTCTTCTTATGCAAAATCTTAGTACAATACATTGTCGTCATACAAATGGAATTAGACAAATAAGTTATTCTTCAGGGAATGGTTTATCAAGCAACAATACAACAAGAATAGAGTTATCAAAACAACAACAATTCATGAAATGGGTGAGTTATGTTGGTGGTCTCAAACACACAGTTTTTAAGGCTGCAAAAAATAAGCTCTCTGCTTCTTATACTTTGCACGTTCGTAAAAAACCTTCTTTTGGAGGTTTCACCTCAATTCAAGATGCCATTGATTCCCTTCCATCCACCAATAATGTTAGAGTTGTCATCAAAGTTCATGCAGGTGTTTACACGGAGAAAGTCAACATTCCTCCTTTAAAATCCTTCATAACCATAGAAGGAGATGATGCAGATACAACAATTGTTCAATGGGGTGACACTGCTCAAACACCTGGTCCAAGAGGGATTCCAATGGACACATATGGTTCAGCAACTTTTGCAGTTAATTCACCTTATTTCATTGCTAAgaacatcacattccaaAACACTTTTCCTGTTCCTGCAGCAGGAGCAATTGGAAAACAGGCAGTGGCATTTAGAATATCAGCAGACACAGCATCATTTTTAGGATGCAAATTTTTAGGAGCACAAGATACACTTTATGATCATGTTGGTAGACATTACTATAAGGATTGTTACATTGAAGGTTCTAGGTGTCACGTGCATGCCATAGCACGTGATACAGGGGCAGTAACAGCACAAGGAAGGAGCAGTGAGTTGGAAGACACAGGATTCTCATTTGTGAATTGTAAGGTAACAGGTTCAGGAGCATTATTATACCTTGGAAGAGCTTGGGGTCCTTATTCTCGTGTTATCTTTGCTTATACATATATGGATAATATCATCATTCCTAAAGGTTGGTCTAATTGGGGTGATCCTAACCGTCAAATGACTGTATTCTATGGACAATACAAATGCAGAGGAGATGGAGCAAACTTTGCAGGAAGAGTATCATGGTCAAGAGAATTAACTGATGATCAAGCTAAACCTTTTCTTTCACTTTCTTTTATTGATGGCACTGAATGGATCAATTTTTAG 1122 0.3708 MSNYDYIFSVLVVLLLLMQNLSTIHCRHTNGIRQISYSSGNGLSSNNTTRIELSKQQQFMKWVSYVGGLKHTVFKAAKNKLSASYTLHVRKKPSFGGFTSIQDAIDSLPSTNNVRVVIKVHAGVYTEKVNIPPLKSFITIEGDDADTTIVQWGDTAQTPGPRGIPMDTYGSATFAVNSPYFIAKNITFQNTFPVPAAGAIGKQAVAFRISADTASFLGCKFLGAQDTLYDHVGRHYYKDCYIEGSRCHVHAIARDTGAVTAQGRSSELEDTGFSFVNCKVTGSGALLYLGRAWGPYSRVIFAYTYMDNIIIPKGWSNWGDPNRQMTVFYGQYKCRGDGANFAGRVSWSRELTDDQAKPFLSLSFIDGTEWINF 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01806 373 SUPERFAMILY Pectin lyase-like 83 372 IPR011050 -
Car08g01806 373 PANTHER PECTINESTERASE 9 372 - -
Car08g01806 373 Pfam Pectinesterase 96 367 IPR000070 GO:0030599|GO:0042545
Car08g01806 373 Gene3D - 81 373 IPR012334 -
Car08g01806 373 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 9 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01806 Car-Chr8 28066519 28069437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01806 5 371 Carbohydrate Esterase AT5G47500 39.895 1.16e-88 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01806 K01051 - gmx:100817924 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01806 08 28066519 28069437 Car08g01806 08 28066519 28069437 ECH