Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01801 ATGCCAGTATTAGTCAAATTTTCACTTTACTTTCATGTAGCCATGTTTCTAATTTTAAGCCATGCAAGTAATTGCAAGTCTCAATATCATTTTCATGTCGAAGAACATTTAATCTTATTGAAGATAAAGTTCCACCTACAAAATCCATCTTTTCTTACTCATTGGAACACATCAAACACCTCTTACTGTTCTTGGCCAGAGATAACTTGCACAAGTGGTTCTGTCACAGGGTTGACTTTAGTCAACTCCAACATAACACAAACTATACCCTTTTTCCTATGTGACCTTAAAAACCTCACACATGTTGATTTCCACAAGAATTTCATTCCTGGTGAGTTTCCAAAAAATTTATACACGTGTTCCAAGTTGAAGTATCTTGACTTGTCAATGAACAACTTGGTTGGTGAAATTCCTTATGATATTCATAGTTTGGTTAATTTGCAATATCTCAACCTTGGTGCAACTAATTTTAGTGGTGACATTCCTTCTAGTATTGGAAGGATGAAAGAATTGAGATTTATTGCACTTCAATATTGTTTGTTCAATGGAACCTTCCCTTATGAGATTGGAAACTTGTTGAATCTTGAAACATTGGATTTGTCATCAAACAACATGTTTTTGCCTTCTAAGTTGCCAATGAATTTGACCAAGTTGAAAAAATTGAAGGTTTTTCATATGTTTGGTTCAAATTTGGTAGGTGAAATACCTGAAGATATTGGAGAAATGGTTGCATTGGAGAATTTGGATATATCAGAAAATAATTTAACTGGAAATATTCCAAGTGGTTTGTTTATGCTAAAGAATCTTAGCATAGTATACCTTGATAGAAATAGTTTCCATGGTGAGATACCAAGTTTTGTTGAAGCAATGAATTTGATAGAAATTGATCTTGCTGAGAATAATCTTACAGGAAAAATACCAAATGATTTTAGTAAGCTGAAAAAGTTAACATGGTTAGATTTGTTCATGAACAATTTGTCAGGCGAGATTCCACAAAGCATAGGAAATCTTCCATCTCTAATAGGTTTTAGTGTCTTCAAGAACAAACTTTCAGGTACACTTCCTAATGATTTTGGTCTTTACTCAAAGCTTGAATATTTTCATATTGCAACCAACAGTTTTAATGGAAGGTTACCTGATAATTTGTGTTATCATGGTAAGTTACATAGTTTAAATGTTTATGAAAATCACTTAAGTGGTGAGTTGCCAAAATCACTTGGAAATTGTAGTAGCCTTGTGGAGCTGAAAATTTACAAAAATGAGTTTTATGGTAAAATTCCTAGTGGTCTTTGGAGTACTAATAATTTGCTTACTTTCATGATAAGTCACAATAAGTTCAGTGGTGAGCTTCCTCAAAATTTGTCTTCAAATGTTTCACTTTTTGACATAAGTTACAATCAGTTTTATGGTAAAATTCCAAATGGAGTTTCTTCATGGACTAATGTTGTTGAGTTTATAGCTAGCAAAAATTTTCTTAATGGAAGTGTTCCTCAAGAGCTAACAAATCTTTTTAAGCTAGAAAGTTTGTTGCTTGATCAAAATCAGCTCAAAGGGTCACTTCCATTTGATGTAATATCATGGCAGTCCTTAGTGACTCTAAATTTGAGCCAAAACCAACTTTTTGGAGAAATTCCAAATTCAATTGGTCATTTACCTTCCCTTAGTGTTCTTGATTTGTCACAAAATCAATTCTCTGGCCAAATACCTTCTATACCTCCTAGAATCACCAATCTTAATCTATCTTCCAATAATTTGACAGGTAGAGTTCCTAGTGAATTTGAAAATTCAGCTTTTGATAGAAGCTTTTTGAACAATTCTGGTTTATGTGCTTATACAAAAGAACTTAGTCTCACCCTTTGCAATTTTGGCCTTGAAAAGCCAACAAAAACCTCACCTTGGTCTGTTGGTTTGATCATTGGCCTAATTGTGGTAGCTTTCTTGTTGGCTTGGTTAGCATCATTCATGATTATCAAACTTTTGACAAAAAGAAAACAAGCATTGGACAATTCATGGAAGCTCATTTCATTTCAAAAGCTGAACTTCACAGTATCAAACATAGTGTCCTCATTGACAGAACAAAATATCATTGGCAGTGGTGGATTTGGAACCGTATACCAAGTTCTGGTTGATGGTTCAAGCAATGTTGCTGTGAAAAAAATGATGAGTAACAGAAAAATAAGGCAAAAGCTTGAAAGTTCATTTCATGCAGAAGTTAAAATATTGAGCAGCATTCGACATCGAAACATTGTGAAGTTGTTGTGTTGTATCTCAAATGATGATTCAATGATGCTTGTGTATGACTATTTGGAAAACAGTAGCCTAGACAAGTGGCTGCACAACAAGAATAAGTCATCAGTTATGTCGGGTTCGGCTCGTCCACATGTTGTCCTTGATTGGCCTAAGAGATTGAAAATAGCCATTGGTGTTGCTCATGGTTTGTGCTATATGCATCATGATTGCTCGCCTCCGATTGTTCATCGCGATATAAAAACAAGCAACATTCTTTTGGATTCTGAGTTCAATGCAAAAGTTGCTGATTTTGGTTTGGCTAAGTTGTTGATGAAGCCAGGACAATTTAACACCATGTCAGCTGTTATTGGATCATTTGGTTATATGGCTCCAGAATATGTTCAAACAACTAGAGTCAATGAAAAAATCGATGTGTTTAGCTTTGGTGTTATCCTATTGGAACTAACAACTGGTAAAGAAGCTACTTATGGTGATGAACACTCATCACTTGTAGAATGGTCATGGAGCCATGTTCATGAAGGAAGCAATATAGAAGAGCTTTTAGACAAAGATTTTGTGGAACCAAGTTACTTGGATGAAATGTGCAACATTTTCAAACTTGGTATAATGTGTACTACTACACTTCCTTCTAGTAGACCTTCCATGAAAGAGGTGGTACACACATTGCTTAGATGTGAAGGAGGGCTTGTGTTTGGACAAAGAAATGTTGAGGAATATGATGTTGTTCCCTTTCTTAAGAATTCAAAAAGGGATAGTAGGTTGAATATTGTTGATAGTGATACTGATTAA 3039 0.3455 MPVLVKFSLYFHVAMFLILSHASNCKSQYHFHVEEHLILLKIKFHLQNPSFLTHWNTSNTSYCSWPEITCTSGSVTGLTLVNSNITQTIPFFLCDLKNLTHVDFHKNFIPGEFPKNLYTCSKLKYLDLSMNNLVGEIPYDIHSLVNLQYLNLGATNFSGDIPSSIGRMKELRFIALQYCLFNGTFPYEIGNLLNLETLDLSSNNMFLPSKLPMNLTKLKKLKVFHMFGSNLVGEIPEDIGEMVALENLDISENNLTGNIPSGLFMLKNLSIVYLDRNSFHGEIPSFVEAMNLIEIDLAENNLTGKIPNDFSKLKKLTWLDLFMNNLSGEIPQSIGNLPSLIGFSVFKNKLSGTLPNDFGLYSKLEYFHIATNSFNGRLPDNLCYHGKLHSLNVYENHLSGELPKSLGNCSSLVELKIYKNEFYGKIPSGLWSTNNLLTFMISHNKFSGELPQNLSSNVSLFDISYNQFYGKIPNGVSSWTNVVEFIASKNFLNGSVPQELTNLFKLESLLLDQNQLKGSLPFDVISWQSLVTLNLSQNQLFGEIPNSIGHLPSLSVLDLSQNQFSGQIPSIPPRITNLNLSSNNLTGRVPSEFENSAFDRSFLNNSGLCAYTKELSLTLCNFGLEKPTKTSPWSVGLIIGLIVVAFLLAWLASFMIIKLLTKRKQALDNSWKLISFQKLNFTVSNIVSSLTEQNIIGSGGFGTVYQVLVDGSSNVAVKKMMSNRKIRQKLESSFHAEVKILSSIRHRNIVKLLCCISNDDSMMLVYDYLENSSLDKWLHNKNKSSVMSGSARPHVVLDWPKRLKIAIGVAHGLCYMHHDCSPPIVHRDIKTSNILLDSEFNAKVADFGLAKLLMKPGQFNTMSAVIGSFGYMAPEYVQTTRVNEKIDVFSFGVILLELTTGKEATYGDEHSSLVEWSWSHVHEGSNIEELLDKDFVEPSYLDEMCNIFKLGIMCTTTLPSSRPSMKEVVHTLLRCEGGLVFGQRNVEEYDVVPFLKNSKRDSRLNIVDSDTD 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01801 1012 Gene3D Ribonuclease Inhibitor 362 622 IPR032675 -
Car08g01801 1012 Pfam Leucine Rich Repeat 529 551 IPR001611 GO:0005515
Car08g01801 1012 SUPERFAMILY Protein kinase-like (PK-like) 679 972 IPR011009 -
Car08g01801 1012 SMART serkin_6 690 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g01801 1012 SUPERFAMILY L domain-like 37 375 - -
Car08g01801 1012 Pfam Protein kinase domain 692 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g01801 1012 Gene3D Ribonuclease Inhibitor 24 81 IPR032675 -
Car08g01801 1012 Gene3D Ribonuclease Inhibitor 209 361 IPR032675 -
Car08g01801 1012 Gene3D Ribonuclease Inhibitor 82 208 IPR032675 -
Car08g01801 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 824 836 IPR008271 GO:0004672|GO:0006468
Car08g01801 1012 Pfam Leucine rich repeat 268 326 IPR001611 GO:0005515
Car08g01801 1012 SUPERFAMILY RNI-like 285 630 - -
Car08g01801 1012 ProSiteProfiles Protein kinase domain profile. 690 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g01801 1012 SMART LRR_typ_2 551 578 IPR003591 -
Car08g01801 1012 SMART LRR_typ_2 313 337 IPR003591 -
Car08g01801 1012 SMART LRR_typ_2 503 527 IPR003591 -
Car08g01801 1012 SMART LRR_typ_2 144 168 IPR003591 -
Car08g01801 1012 SMART LRR_typ_2 192 214 IPR003591 -
Car08g01801 1012 SMART LRR_typ_2 242 266 IPR003591 -
Car08g01801 1012 Gene3D Phosphorylase Kinase; domain 1 666 768 - -
Car08g01801 1012 Gene3D Transferase(Phosphotransferase) domain 1 769 979 - -
Car08g01801 1012 Pfam Leucine rich repeat N-terminal domain 37 70 IPR013210 -
Car08g01801 1012 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 11 1003 - -
Car08g01801 1012 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 11 1003 - -
Car08g01801 1012 ProSitePatterns Protein kinases ATP-binding region signature. 696 719 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01801 Car-Chr8 28017565 28021573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01801 39 1010 Receptor kinase-like Gene Family AT5G25930 49.443 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Car08g01801 Pkinase 3.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01801 - - cam:101515509 2030.37