Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01794 ATGAGTTCTAAAAAAGAGGGGGTGATAAGGAAAAAAGAGGGAGGTTCAATAAGCATAATTTTGAGATATGGTGATTGGATTGATGTAGTTTTAATGTTGATGGGTTCTTTGGGAGCAATTGGAGATGGAATGTCAACAAATGTTTTGCTTCTTTTTGCAAGTCGTATTATGAACAGCTTAGGTAATAGGAACAACAACAATAGTGACACTTCCATGTCCGAGGTTGAAAAGTGCAGCTTATATTTTGTCTACTTGGGATTGGCAGCCATGGTGGTGGCTTTCATGGAAGGCTATTGTTGGAGCAAAACAAGTGAGAGACAAGTGTTGAGAATTCGTTACAAGTATTTGGAAGCTGTTCTTAGACAAGAAGTTGGGTTTTTTGATTCACAAGAAACAAATACTTCTGAAATCATTAATAGCATATCAAAGGACACTTCACTTATACAAGAAGTTCTTAGTGAAAAGGTGCCATTATTTTTGATGCAATCATCATCATTCATATCAGGAATAGCATTTGCAACATATTTTTCATGGAGGTTGGCTTTAGTAGCATTTCCAACTCTACTGTTGCTAATTATACCTGGCATGATTTATGGAAAATATTTAATTTATTTATCAAAATCATTAATGAAAGAGTATGGAAAAGCAAATGCAATTGTGGAACAAGCACTAAGTTCAATAAAAACAGTGTATTCATTCACAGCTGAAAAGAGAATAATGGAAAAATATTCAGAAATATTAGATAGAACTTCAAGACTTGGAATCAAACAAGGAATTGCAAAGGGTCTTGCTATTGGAAGCATTGGTTTGTCTTTTGCAATATGGGCTTTTCTTGCTTGGTATGGAAGTCATTTGGTTATGTATAAAGGTGAAAGTGGTGGAAGAATCTATGCTGCTGGAATTTGCTTCATTATGAGTGGATTATCATTGGGAGTGGTACTTCCTGATTTGAAGTACTTCACAGAAGTATCAATAGCTGCATCAAGAATATTTGCTATGATTGATAGAATAGCTGAAATTGATGGTGAAGACACAACAAAAGGAATCACATTACAAAACATTAATGGAAAATTAGATTTTGAGAATGTAAAATTCACATACCCTTCAAGACCAGAAAGTATAATATTAAATAATTTTAATCTCAAAGTTGAGGCAGGGAAAAGTGTTGCACTAGTTGGTGCTAGTGGAAGTGGAAAATCAACAGCAATAGCATTGTTACAAAGATTTTATGATGCAAATGAAGGTGTTGTTAGAGTTGATGGTTTTGATATAAAGAGTTTACAATTGAAATGGATAAGAGGGAAAATGGGACTTGTGAGTCAAGAACATGCAATGTTTGGAACATCTATTAAGGAAAATATTATGTTTGGAAAAAATGATGCTACTATGGATGAAATTGTTGTTGCTGCCACAGCTGCTAATGCTCATAATTTCATTAGACAACTTCCTCAAGGCTATGAAACCAAGATTGGAGAAAGAGGTGCACTTCTTTCAGGAGGAcaaaagcaaagaatagcaattgcaagagctatCATAAAAAATCCTGTAATTCTTCTACTTGATGAAGCAACAAGTGCACTTGACTCTGAATCTGAATTATTGGTCCAAAATGCCCTTGATCAAGCCTCTATGGGGAGGACTACTTTGGTTGTTGCTCACAAGCTATCAACAATTAGAAATGCAGACCTCATAGCAGTTATGAGTAATGGTTGCATCATTGAAACTGGCACACACAATCAACTCATCAACACTCCAAATGGTCACTATGCAAAATTAGCAAAATTACAAACACAATTAAGCATTGATGACCAAGATCAAATTCAAGAACAAACTCTTCTTCTTTCTGCAGCAAAAAGTAGTGCAGGTAGACCAAGCACTGCAAGATCAAGTCCAGTCATTTTCCCAAAATCACCATTGCCTAATGATGAAACCATATCTCATGTTTCTCATCATCCTCCACCTTCATTTCCAAGGCTTCTTTCTTTGAATTCACCTGAATGGAAACAAGGACTAATTGGAACACTCTCAGCTATCGCCTTGGGTTCAATCCAACCTTTATATGCATTAACAATCGGTGGTATGATTTCGGCTTTTTTTGCTAAAAGCCATCAAGAAATGAAACATAGAATCATGAACTATTCATTCATTTTCACTTCCTTATCGCTCGCTTCGATAGTACTCAATCTCTTACAACATTACAATTTTGCTTATATGGGAGCAAAGTTAACAAAAAGAATAAGATTGTGTATGTTGGAGAAAATCTTAACCTTTGAAACTTCTTGGTTTGATGAAGAAAAAAACTCTAGTGGAGCATTATGTTCAAGGTTGAGTAATGAAGCTTCCATGGTGAAATCTCTTGTTGCTGATAGACTCTCTTTACTTGTTCAAACAACTTCATCGGTTGCGATCGCGATGATCATAGGACTTATTGTAGCATGGAAGCTTGCTCTTGTTATGATAGCTGTTCAACCACTTACAATAGTATGTTTTTACACAAGAAAAGTTTTGCTTTCGACGCTTTCGAATAAATTTGTTAAGGCGCAGAATCGAAGCACGCAGATCGCGGTAGAGGCTGTTTATAATCATAGAATTGTGACATCATTTGGAAGTATTACAAAAGTTTTGAAACTGTTTGATGAAGCTCAAGAGGAGCCaaggaaggaaggtaggaagaaagCTTGGCTGGCAGGCATTGGAATGGGATCAGCTCAATGCTTAACTTTCATGTCATGGGCTTTGGATTTTTGGTTTGGTGGAAAATTGGTGCAAATGAGAGAGATTTCATCAGGTGATGTGTTTAAGACTTTTTTTGTTTTGGTGAGTACTGGAAAAGTTATTGCTGAAGCTGGTAGCATGACTTCTGATCTTGCTAAGAGTTCAACTGCTGTTGCATCAGTGTTTGAGATTCTTGATAGACAATCACTTATTCCAAAGGATGGAGAAGGAACTAACAATGGCATTAAGTTGGAAAAGATGAGTGGAAAAATAGAGTTAAAGAATGTTGATTTTTCTTATCCAAGTAGGTCAAGGACACCAATTTTGAAGAATTTTTGCTTAGAGGTAAGGCCAGGAAAAAGTGTAGGACTAGTTGGAAAAAGTGGATGTGGAAAATCAACAGTTATTTCCTTAATTCAAAGATTCTATGATGTTGAGAAAGGATCATTGAAAATTGATAATGTGGACTTAAGGGAATTAGATATTCATTGGTATAGACAACACACAGCACTTGTAAGTCAAGAACCTGTTATATATTCCGGCACAATTCGCGACAACATCTTGTTCGGAAAGCAAGACGCGACGGAAAATGAAGTGGTTGAGGCTGCTAGAGCTGCAAATGCTCATGACTTCATATCATCATTGAAAGATGGATATGAAACAGAATGTGGAGAAAGGGGAGTTCAATTATCAGGAGGAcaaaagcaaagaatagcaattgcaagagctataATTAGAAATCCAATCATACTTCTTCTTGATGAAGCAACAAGTGCTTTAGATGTTCAATCAGAACAAGTTGTTCAAGAAGCACTTGATAGGATCATGGTAGGAAGAACTACTATTGTTGTGGCACATAGACTTAACACAATCAAAGAACTTGATTCAATTGCTTATGTTTTAGAGGGTAAGGTTGTGGAACAAGGAACCTATGCTCAACTTAGGCACATGAGAGGTGCATTTTTCAACCTTGCCAACCATTAA 3699 0.3531 MSSKKEGVIRKKEGGSISIILRYGDWIDVVLMLMGSLGAIGDGMSTNVLLLFASRIMNSLGNRNNNNSDTSMSEVEKCSLYFVYLGLAAMVVAFMEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFDSQETNTSEIINSISKDTSLIQEVLSEKVPLFLMQSSSFISGIAFATYFSWRLALVAFPTLLLLIIPGMIYGKYLIYLSKSLMKEYGKANAIVEQALSSIKTVYSFTAEKRIMEKYSEILDRTSRLGIKQGIAKGLAIGSIGLSFAIWAFLAWYGSHLVMYKGESGGRIYAAGICFIMSGLSLGVVLPDLKYFTEVSIAASRIFAMIDRIAEIDGEDTTKGITLQNINGKLDFENVKFTYPSRPESIILNNFNLKVEAGKSVALVGASGSGKSTAIALLQRFYDANEGVVRVDGFDIKSLQLKWIRGKMGLVSQEHAMFGTSIKENIMFGKNDATMDEIVVAATAANAHNFIRQLPQGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGRTTLVVAHKLSTIRNADLIAVMSNGCIIETGTHNQLINTPNGHYAKLAKLQTQLSIDDQDQIQEQTLLLSAAKSSAGRPSTARSSPVIFPKSPLPNDETISHVSHHPPPSFPRLLSLNSPEWKQGLIGTLSAIALGSIQPLYALTIGGMISAFFAKSHQEMKHRIMNYSFIFTSLSLASIVLNLLQHYNFAYMGAKLTKRIRLCMLEKILTFETSWFDEEKNSSGALCSRLSNEASMVKSLVADRLSLLVQTTSSVAIAMIIGLIVAWKLALVMIAVQPLTIVCFYTRKVLLSTLSNKFVKAQNRSTQIAVEAVYNHRIVTSFGSITKVLKLFDEAQEEPRKEGRKKAWLAGIGMGSAQCLTFMSWALDFWFGGKLVQMREISSGDVFKTFFVLVSTGKVIAEAGSMTSDLAKSSTAVASVFEILDRQSLIPKDGEGTNNGIKLEKMSGKIELKNVDFSYPSRSRTPILKNFCLEVRPGKSVGLVGKSGCGKSTVISLIQRFYDVEKGSLKIDNVDLRELDIHWYRQHTALVSQEPVIYSGTIRDNILFGKQDATENEVVEAARAANAHDFISSLKDGYETECGERGVQLSGGQKQRIAIARAIIRNPIILLLDEATSALDVQSEQVVQEALDRIMVGRTTIVVAHRLNTIKELDSIAYVLEGKVVEQGTYAQLRHMRGAFFNLANH 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01794 1232 CDD ABC_MTABC3_MDL1_MDL2 359 596 - -
Car08g01794 1232 SUPERFAMILY ABC transporter transmembrane region 654 972 IPR036640 GO:0005524|GO:0016021
Car08g01794 1232 MobiDBLite consensus disorder prediction 618 638 - -
Car08g01794 1232 ProSitePatterns ABC transporters family signature. 1135 1149 IPR017871 GO:0005524
Car08g01794 1232 ProSitePatterns ABC transporters family signature. 497 511 IPR017871 GO:0005524
Car08g01794 1232 CDD ABC_6TM_Pgp_ABCB1_D2_like 660 976 - -
Car08g01794 1232 Gene3D ABC transporter type 1, transmembrane domain 80 886 IPR036640 GO:0005524|GO:0016021
Car08g01794 1232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 596 IPR027417 -
Car08g01794 1232 CDD ABC_6TM_Pgp_ABCB1_D1_like 32 330 - -
Car08g01794 1232 Gene3D - 356 620 IPR027417 -
Car08g01794 1232 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 671 958 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car08g01794 1232 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 19 1231 IPR039421 -
Car08g01794 1232 CDD ABC_MTABC3_MDL1_MDL2 996 1230 - -
Car08g01794 1232 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 33 322 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car08g01794 1232 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 996 1232 IPR003439 GO:0005524
Car08g01794 1232 Pfam ABC transporter transmembrane region 38 289 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car08g01794 1232 Pfam ABC transporter transmembrane region 671 941 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car08g01794 1232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 985 1231 IPR027417 -
Car08g01794 1232 MobiDBLite consensus disorder prediction 618 632 - -
Car08g01794 1232 Gene3D - 986 1232 IPR027417 -
Car08g01794 1232 PANTHER ABC TRANSPORTER B FAMILY MEMBER 8-RELATED 19 1231 - -
Car08g01794 1232 Pfam ABC transporter 376 525 IPR003439 GO:0005524
Car08g01794 1232 Pfam ABC transporter 1014 1163 IPR003439 GO:0005524
Car08g01794 1232 SMART AAA_5 1023 1215 IPR003593 -
Car08g01794 1232 SMART AAA_5 385 571 IPR003593 -
Car08g01794 1232 SUPERFAMILY ABC transporter transmembrane region 27 336 IPR036640 GO:0005524|GO:0016021
Car08g01794 1232 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 358 594 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01794 Car-Chr8 27932597 27942407 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01794 37 596 Calmodulin-binding Proteins AT2G36910 35.053 1.93e-101 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01794 K05658 - gmx:100801088 2040
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01794 08 27932597 27942407 Car08g01794 08 27932597 27942407 ECH