Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01784 ATGGTTCAAACTGATTATAACACTAACTACAATTCACCTTCACCACAATCATTGAGTTCTTCAAGTGAAGAAAACAGAGGGAAAAAGAGAGAAAGAGATAACAACCTCaacaataaccgtaacagtaacgttaatcgtaacggtaacagtaactgtaacagtaaACATCCAGTTTACAGAGGAGTTAGAATGCGCACGTGGGGAAAATGGGTATCAGAAATCCGCGAACCACGGAAGAAAAACAGAATATGGTTAGGAACATTCGCCACCGCGGAAATGGCGGCGCGTGCACACGACGCGGCGGCACTAACAATTAAAGGAACCTCCGCAATCCTTAACTTCCCCGAACTCGCGGGTTTACTGCCCCGACCCGCTTCTAAATCGCCTAGAGATGTTCAAGCCGCGGCCGCCAAAGCCGCTTCGATGGTTGctccgccgtctgcttcctcctcctcctcttcttcttcttcatcatcGACGCCGGAGGATCTCGACGAGATTGTGGAACTACCAAGACTCGGAACAAGTTATGAGTCACCCGACCCGAATAACGAGTTTGTGTATTTTGACCCGATTGATGAATGGCATTATTCTTATAGCATTTATGATGATGAAGAAGAGAATGATTATGGTTATGGTGGCAGTGATTACTTCAACTTTGATATCATCAATGCATGA 678 0.3894 MVQTDYNTNYNSPSPQSLSSSSEENRGKKRERDNNLNNNRNSNVNRNGNSNCNSKHPVYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDAAALTIKGTSAILNFPELAGLLPRPASKSPRDVQAAAAKAASMVAPPSASSSSSSSSSSSTPEDLDEIVELPRLGTSYESPDPNNEFVYFDPIDEWHYSYSIYDDEEENDYGYGGSDYFNFDIINA 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01784 225 SUPERFAMILY DNA-binding domain 58 116 IPR016177 GO:0003677
Car08g01784 225 MobiDBLite consensus disorder prediction 1 57 - -
Car08g01784 225 MobiDBLite consensus disorder prediction 37 56 - -
Car08g01784 225 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Car08g01784 225 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Car08g01784 225 MobiDBLite consensus disorder prediction 144 163 - -
Car08g01784 225 ProSiteProfiles AP2/ERF domain profile. 58 115 IPR001471 GO:0003700|GO:0006355
Car08g01784 225 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 9 216 - -
Car08g01784 225 SMART rav1_2 58 121 IPR001471 GO:0003700|GO:0006355
Car08g01784 225 Pfam AP2 domain 57 107 IPR001471 GO:0003700|GO:0006355
Car08g01784 225 Gene3D AP2/ERF domain 58 116 IPR036955 GO:0003700|GO:0006355
Car08g01784 225 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 216 - -
Car08g01784 225 MobiDBLite consensus disorder prediction 138 164 - -
Car08g01784 225 MobiDBLite consensus disorder prediction 1 22 - -
Car08g01784 225 CDD AP2 59 117 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01784 Car-Chr8 27814238 27815443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01784 53 216 AP2-EREBP Transcription Factor Family AT4G32800 53.061 2.61e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car08g01784 AP2 4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01784 K09286 - tcc:18588535 194.126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01784 08 27814238 27815443 Car08g01784 08 27814238 27815443 ECH
Car06g00325 06 3482784 3483982 Car08g01784 08 27814238 27815443 PCT