Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01777 ATGGATCGCATCATCGGCGAAAAATTCAAGTTAGGTCGTAAGATCGGTAGCGGATCCTTCGGTGAAATCTACCTCGCAACTCATATTGATACCTTTGAGATCGTCGCCGTCAAGATCGAGACTGGTAAAACGAAGCATCCGCAATTGCTTTATGAAGCTAAGCTCTATAATATTCTTCAAGGAGGAAGTGGCATCCCAAGCATAAGATGGAGTGGTGTAGACGGGGAAGACAACGTGCTTGTTATGGATTTGCTGGGGCCTAGTCTCGAGGATCTTTTTGTTTATTGTGGAAGAAAGTTCTCCCTCAAAACTGTCTTGATGTTGGCTGATCAAATGATGACCAGAATAGAATATGTGCATTCTAAAGGATTCCTACATAGGGATATAAAACCGGATAACTTTCTCATGGGACTTGGTCGGAAGGCAAACCTGGTTTACGTAATTGATTTTGGGCTTGCAAAACGGTATCGGGACTCTACAACCAATCGCCACATCCCCTACAGGGAGAACAAAAACTTAACAGGGACTGCACGGTATGCAAGCTGCAATACTCATCTTGGCATTGAGCAAAGCCGGCGGGATGATTTGGAGTCACTGGGGTATGTGCTTCTGTATTTCCTCAGAGGAAGCCTTCCATGGCAAAACCTAAAGGCTGCGACAAAGAAGCAAAAGTATGATAAGATATGCGAAAAGAAAGTATCAACTCCTATTGAGGTGTTATGCAAATCTCATCCGGTAGAGTTTGCTTCGTACTTCCATTACTGCCACTCTCTAACCTTTGATCAGCGGCCTGACTATGGATTCTTGAGGCGCCTATTTCGAGAGTTATTTGCTCGGGAAGGTTATACATTTGATTATGTATTTGATTGGACAATTTTAAAGTACCAGCAATCACTAAAGAGTAGAGTCCAGCCTCACATATCCCCGGTTCCTCTAGCGAGCAACGATCGAGCGATGCCCATGGATGTGGATAACCAGCAAGGGGCTGTCTCAACAGAACAAATTAAATCAGGCCATACTACTAGTTCTGGTGTTAAATTTCAGTTTAAGTCACCTGTTGGTAAAAATTTGGGTTCTGAAAATCCTCTTGGCAAGAATATTTTTGGTGAAGCAACTATCCCTTCTACTTCGTACGCTTTTGAAGCATCAAGAAGGAACTCTTTGAAGCCCGCGGTGTCCACTGAAGCTGCAAACCATAGACATGGGCAAGGGAGCAGTAAAATTGGTCCTTCAAGTAGTCGGATTTCATCTGTGCTGCACATAAGTGTTAATCTGATCAAGAAGATTCCCTGCATATTCATGGGGTATTGCTTGCATGTAATCTACCAAAGGAGACAACAAATGTGCTACAAGAATGCATAG 1362 0.4339 MDRIIGEKFKLGRKIGSGSFGEIYLATHIDTFEIVAVKIETGKTKHPQLLYEAKLYNILQGGSGIPSIRWSGVDGEDNVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMTRIEYVHSKGFLHRDIKPDNFLMGLGRKANLVYVIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQNLKAATKKQKYDKICEKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLRRLFRELFAREGYTFDYVFDWTILKYQQSLKSRVQPHISPVPLASNDRAMPMDVDNQQGAVSTEQIKSGHTTSSGVKFQFKSPVGKNLGSENPLGKNIFGEATIPSTSYAFEASRRNSLKPAVSTEAANHRHGQGSSKIGPSSSRISSVLHISVNLIKKIPCIFMGYCLHVIYQRRQQMCYKNA 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01777 453 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g01777 453 Gene3D Transferase(Phosphotransferase) domain 1 1 340 - -
Car08g01777 453 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g01777 453 MobiDBLite consensus disorder prediction 390 412 - -
Car08g01777 453 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3-RELATED 1 408 - -
Car08g01777 453 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Car08g01777 453 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Car08g01777 453 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g01777 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Car08g01777 453 PANTHER CASEIN KINASE-RELATED 1 408 - -
Car08g01777 453 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01777 Car-Chr8 27735950 27740619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01777 9 213 EF-hand Containing Proteins AT4G23650 29.384 2.87e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Car08g01777 Pkinase 7.8e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01777 K08960 - gmx:100805890 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01777 08 27735950 27740619 Car08g01777 08 27735950 27740619 ECH
Car06g00316 06 3401887 3406433 Car08g01777 08 27735950 27740619 PCT