Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01742 ATGGGTGGGATGGAGCAAAACAACGTGATCGCACCGTTCGTTATGAAGACTTACCAAATGGTTAACGATCAAACGACTGATAATCTCATCAAGTGGGGCCCAGCTAACAACAGTTTCATCGTCCTCGACCCACTTGATTTCTCTCACTCACTCCTTCCTGTGTTTTTCAAACACAACAACTTCTCTAGCTTCGTTAGACAACTCAACACCTACGGATTCAGAAAAGTGGATCCGGATAAATGGGAATTTGCGAACGAGTGGTTTTTAAGAGGACAAAAGCACTTATTGAAGAACATAGCTAGGAAAAAGCACGTTGGTGGAAAGATTAATAATAGTAATTATAATTATTTTAATGATGTAAAGTTTGAGGATTTAGACGAAGATGAAGCTATGGTGACGGAAATAGCGAAGCTAAAAGAAGAACAAAAAACATTGGAAGAAGAACTTCAAAGGATGAATAATCGATTAGAAACAACAGAGAAACGACCACAACAAATGATGGCTTTTCTATGTAATGTCGTTGAAGATCCTCAAATTTTGTCTAGAATTCTTGTTGAGAGGGAGAAAGAGAAGGTTATTGATAAGAAAAAACCACGGTTGATATTGCCGGAGACGGCGGCGATGACGGCGGCGACGACATCGACTTCTTCTTCATCTTCCGGCATGGCGGTGGTGAATTCCGTGAAGACGGAGTTCGAGGAAGACGAGGTGACGGTTGCTTATAATATGATGTCGTTGTCGCCGGAGACGGGTTTTGAAATTGATTATTTCCGCCGTGAGCCGCCACCGGCGGTGGCGCCGGTGGTTGGTTGGTGGGGGCAGACTCAGATTGGGCAAATGGGTTATGGATGTGATAGCACGGTTGCTCCGACGCCGTTGACGGTGGTGTCGCCGGCGGCGGCACCGGAATTGGGACGTGTGGGAATATTTAGTGAAATGGCGGCGGAGAATAATTCGTTGCCACCTTATCCTTTTTCATTATTGGAAGGTGGGTTTTAG 999 0.4484 MGGMEQNNVIAPFVMKTYQMVNDQTTDNLIKWGPANNSFIVLDPLDFSHSLLPVFFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEWFLRGQKHLLKNIARKKHVGGKINNSNYNYFNDVKFEDLDEDEAMVTEIAKLKEEQKTLEEELQRMNNRLETTEKRPQQMMAFLCNVVEDPQILSRILVEREKEKVIDKKKPRLILPETAAMTAATTSTSSSSSGMAVVNSVKTEFEEDEVTVAYNMMSLSPETGFEIDYFRREPPPAVAPVVGWWGQTQIGQMGYGCDSTVAPTPLTVVSPAAAPELGRVGIFSEMAAENNSLPPYPFSLLEGGF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01742 332 SUPERFAMILY "Winged helix" DNA-binding domain 10 102 IPR036390 -
Car08g01742 332 Coils Coil 128 162 - -
Car08g01742 332 Pfam HSF-type DNA-binding 13 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g01742 332 Gene3D - 5 103 IPR036388 -
Car08g01742 332 SMART hsfneu3 9 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g01742 332 ProSitePatterns HSF-type DNA-binding domain signature. 52 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g01742 332 PANTHER HEAT STRESS TRANSCRIPTION FACTOR C-1 11 270 - -
Car08g01742 332 PRINTS Heat shock factor (HSF) domain signature 13 36 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g01742 332 PRINTS Heat shock factor (HSF) domain signature 51 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g01742 332 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g01742 332 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 270 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01742 Car-Chr8 27290260 27291964 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01742 9 202 HSF AT3G24520 64.646 1.53e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Car08g01742 HSF_DNA-bind 7.4e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01742 K09419 - gmx:100794896 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01742 08 27290260 27291964 Car08g01742 08 27290260 27291964 ECH