Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01730 ATGGATGACATGGAAGACGACGCAAGGTACCCTTCAAAAGGATACCCTTTGCGACGCAAAAACCCTAACCTTCGTCAAAAACACCCAATTCGCACCTTACAATATCATCACCCACCCACTCTTCGTTACAACGATCCCGACCACAACAACAACAACATCGAAGAAGATTACGAAGACGAAGAACCCGAGGAATTCGACGACTACAACGTCGATGAAGAAGATGAAGACGGTATTGAAAATGGGTATATCGGTAATTTCGATGAAAATGAAGGGTTCATTAGGAAAAAGAGAAAAATACGAAGTGGTAGTGGTTCTTCTTCCGTTTCAAACTATGATTTGATGCCACGTGGCAAATTCTCATACGTTAATCGTGGCAGTGGTGGTGGTAGTTCTTCTGTGTCAGAGGAATGGAATGAACATGGAACTTTTGTGTTGTTGGAAATTTGGGGTGAAAAATTTCTTCAACTTGGTAGGAACAGTTTAAGATCAGAGGAATGGCATGAAGTTGCTGAGAAAGTTTCTGAGGAGTTAAAAGTTGAAAGGAACGTTTCACAGTGTAGGAGTGTTTTGGATAAAGTGAAAAGAAGGTACAAGAAAGAGAAAAGTAGAATGGATGAGATGGGTTTGGGTGTTAGTTCATGTAAATGGCCATTTTTCAAGAAGATGGATATGTTGATGTCTTCGTCGGCAAGGCAAGAGTATGGACTTGCTTGTGGCGTTGATTCGGGCGAGTTTGTTTTTATGAATACGCGGGTTTATTTGAATAGGTCTAATGGTTTTGATGAAATGAGGGATAGCCCTGGTGAGTCGGAGACTTCggaggatgatgaggatgacgatgaagatgatgatttcgatggagttcgtggcggtggtggtgatgaggaggaggatgaggtggataaggaggaggaggaggCTTCGTATAGGGTTTTGGCCGATAGTATTCAGAAGTTTGGGAAGATATATGAGAAGATTGAGAATACTAAGAGGCAACAGATGATGGAGTTGGAGAAGATGAGGATGGATTTTAATAGAGAATTGGAGCTGCAGAAGAAGCAGATTTTGGAAAGGACTCAGGCTGAAATTTCGAAGATGCAAGAAGTAGGAGATGATGATGATACAGACACTTCTGCTGATAATCTCAGTGAATAA 1155 0.3732 MDDMEDDARYPSKGYPLRRKNPNLRQKHPIRTLQYHHPPTLRYNDPDHNNNNIEEDYEDEEPEEFDDYNVDEEDEDGIENGYIGNFDENEGFIRKKRKIRSGSGSSSVSNYDLMPRGKFSYVNRGSGGGSSSVSEEWNEHGTFVLLEIWGEKFLQLGRNSLRSEEWHEVAEKVSEELKVERNVSQCRSVLDKVKRRYKKEKSRMDEMGLGVSSCKWPFFKKMDMLMSSSARQEYGLACGVDSGEFVFMNTRVYLNRSNGFDEMRDSPGESETSEDDEDDDEDDDFDGVRGGGGDEEEDEVDKEEEEASYRVLADSIQKFGKIYEKIENTKRQQMMELEKMRMDFNRELELQKKQILERTQAEISKMQEVGDDDDTDTSADNLSE 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01730 384 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 44 379 IPR044823 -
Car08g01730 384 PANTHER ALCOHOL DEHYDROGENASE TRANSCRIPTION FACTOR MYB/SANT-LIKE FAMILY PROTEIN 44 379 - -
Car08g01730 384 Gene3D - 137 199 - -
Car08g01730 384 MobiDBLite consensus disorder prediction 268 304 - -
Car08g01730 384 Coils Coil 323 354 - -
Car08g01730 384 MobiDBLite consensus disorder prediction 258 309 - -
Car08g01730 384 MobiDBLite consensus disorder prediction 1 64 - -
Car08g01730 384 MobiDBLite consensus disorder prediction 359 384 - -
Car08g01730 384 Pfam Myb/SANT-like DNA-binding domain 135 224 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01730 Car-Chr8 27161674 27168826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01730 137 365 Trihelix Transcription Factor Family AT1G54060 28.947 4.44e-18 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Car08g01730 Myb_DNA-bind_4 4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01730 - - gmx:100790166 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01730 08 27161674 27168826 Car08g01730 08 27161674 27168826 ECH