Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01727 ATGAGGAAAAAAGGTTATCATTCGAATCCGTCGTGTGTTGTTGTTCTTTTTTCATTCTTCTTAGGTTTAACACTACTCTCTACCTTAAGTGTTGTTTCATCGTATCATGTCTCAGATGGGTCCCTCACAGAAAATGAAGCGATGTACATCAAACATCGCCAACTTCTTTACTATAGAGACCAATTTTGTGATAGAGGTGAAAATGTTACGGTGGATCCGAACCTAGTTTTTCAAAACAACCGCATCAAAAACGCTTACGTGGCGTTACAAGCTTGGAAACACGCTATTCTTTCTGATCCACGAAACTGCACCGTTGATTGGGTTGGTTCCAATGTGTGCAACTACACAAATGTTTACTGTGCACCCGCGTTGGATAACCCTAAGATCCAAACCGTTGCCGGAATCGACCTTAATCATTGTGACATTGCCGGATACCTACCGGAGGAGCTTGGTCTTTTGACTGACCTTGCGCTTTTCCATGTCAACAGTAACAGATTCTGTGGAACTGTTCCTCATAAATTTGAAAATCTGAAAATCTTGTTCGAGTTGGATCTGAGTAATAACCGTTTTGCCGGAAAGTTTCCGGAAGTTGTTCTCCGGTTACCGGAGTTGAAATTTTTAGATCTGAGGTTTAATGAATTTGAAGGAACGGTTCCGAAGGCGCTTTTTGATAAAGATTTGGACGCGATTTTCATCAATCATAACAGATTCGTTTTCGATTTACCGGATAATTTCGGTAATTCCCCGGTTTCGGTTATTGTTCTTGCGAATAACCGTTTTCATGGATGTTTTCCGGCGGGTTTCGGAAACATGACGAATTTGAATGAAATTATTTTGATGAATAATGGTTTTCAATCGTGTTTGCCGGATGAAATAGGGCTTTTGAAGAATTTGACGGTGTTTGATGTTAGTTTCAACAAGTTTTTGGGACCGTTGCCGGAGGCGATTGGAGGAGCAGTGAGTTTGGAACAGTTGAATGTGGCGCATAATTATCTTTCCGGTAAGATACCGGAGAGTATTTGTAAGTTGCCGAATTTGAAGAACTTCACTTATAGTTATAACTTCTTTACCGGTGAACCACCGAGTTGTTTGGCGGTTCCGGCATTTGATGATAAACAAAACTGTTTGCCGGCGAGACCGAAACAACGGTCGGAGAAGTTATGTAAGTCGTTTTTGTCTCATCATATTGATTGTAATTCTTTTAGATGTAAAGCTTTTGTTCCTTCGTTACCTTCACCGCCTCCTTCACCGGTATTTTTGCCACCACCATCGCCAGTGCTTTCTCCTCCACCACCGGTGTTATCTccacctccgccacaattctcatcacctccacctccgccaccggtttattcaccaccgccacctcctccttcaccgccaccaccttcaccgccgccaccacctcctccagtgtattcaccacctcctccaccaccatcaccgccaccaccttctccaccaccaccacctccaccggtatactctccaccaccacctccaccagtgtactctccaccaccgccaccaccagcgtactctccaccacctccaccaccgccaccaccagcgtactctccaccacctccacctccagtgtactctccaccaccaccaccaccatcaccgccacctccagtttatttgccacctccatcaccaccaccaccatcaccaatatattgtgttagttctccgccacctccaccaccaaattcaccacctcctccggctcctgtattctcaccaccaccacctgtaccttactactatagctcaccacctccaccgtcacctcagtcgcctccaccaccacctcattcgccgccaccaccacctcactctcctcccccaccttatccctatttatcaccaccaccacctcctccagttcactcacctccaccaccagtccagtccccaccaccaccatctccaccaccttgtatagaacctcctccacctccaccaccaccttgtgaagaacattcaccaccaccaccgtcgccatcacccccaccaccaccaccacaccaaacaccttatcacccaccaccatctccatcaccaccaccagtatattcatcaccaccgccagcaccagtctattcaccaccaccaccaccaattcaatacaattcaccaccaccaccaccaccTACTCCTGTATATGAAGGGCCATTGCCACCTGTTGTTGGAATCTCATATGcatcaccaccaccaccaccCTTTTATTGA 2238 0.2525 MRKKGYHSNPSCVVVLFSFFLGLTLLSTLSVVSSYHVSDGSLTENEAMYIKHRQLLYYRDQFCDRGENVTVDPNLVFQNNRIKNAYVALQAWKHAILSDPRNCTVDWVGSNVCNYTNVYCAPALDNPKIQTVAGIDLNHCDIAGYLPEELGLLTDLALFHVNSNRFCGTVPHKFENLKILFELDLSNNRFAGKFPEVVLRLPELKFLDLRFNEFEGTVPKALFDKDLDAIFINHNRFVFDLPDNFGNSPVSVIVLANNRFHGCFPAGFGNMTNLNEIILMNNGFQSCLPDEIGLLKNLTVFDVSFNKFLGPLPEAIGGAVSLEQLNVAHNYLSGKIPESICKLPNLKNFTYSYNFFTGEPPSCLAVPAFDDKQNCLPARPKQRSEKLCKSFLSHHIDCNSFRCKAFVPSLPSPPPSPVFLPPPSPVLSPPPPVLSPPPPQFSSPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPVYSPPPPPPAYSPPPPPPPPPAYSPPPPPPVYSPPPPPPSPPPPVYLPPPSPPPPSPIYCVSSPPPPPPNSPPPPAPVFSPPPPVPYYYSSPPPPSPQSPPPPPHSPPPPPHSPPPPYPYLSPPPPPPVHSPPPPVQSPPPPSPPPCIEPPPPPPPPCEEHSPPPPSPSPPPPPPHQTPYHPPPSPSPPPVYSSPPPAPVYSPPPPPIQYNSPPPPPPTPVYEGPLPPVVGISYASPPPPPFY 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01727 745 MobiDBLite consensus disorder prediction 431 492 - -
Car08g01727 745 MobiDBLite consensus disorder prediction 591 745 - -
Car08g01727 745 Gene3D Ribonuclease Inhibitor 86 246 IPR032675 -
Car08g01727 745 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 16 470 - -
Car08g01727 745 Pfam Leucine Rich Repeat 321 343 IPR001611 GO:0005515
Car08g01727 745 Gene3D Ribonuclease Inhibitor 247 396 IPR032675 -
Car08g01727 745 Pfam Leucine rich repeat 158 213 IPR001611 GO:0005515
Car08g01727 745 PRINTS Proline rich extensin signature 405 417 - -
Car08g01727 745 PRINTS Proline rich extensin signature 422 438 - -
Car08g01727 745 PRINTS Proline rich extensin signature 446 458 - -
Car08g01727 745 PRINTS Proline rich extensin signature 459 480 - -
Car08g01727 745 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 4 16 470 - -
Car08g01727 745 SUPERFAMILY L domain-like 87 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01727 Car-Chr8 27098284 27101742 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01727 1 403 Trihelix Transcription Factor Family AT4G18670 67.654 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01727 - - mtr:MTR_6g086115 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01727 08 27098284 27101742 Car08g01727 08 27098284 27101742 ECH