Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car08g01714 | ATGGACTCTGTAGATGAAAGCCAGAGAACTCTGTACCCATATGTTACTGGCTCCTCCGTCGTTGCTATCAAATACAAAGATGGGATTCTTATGGCTGCTGATATGGGAGGTTCATATGGATCTACGTTGCGATACAAGAGTGTTGAGCGTTTGAAGCCTATTGGAAAGCACTCCCTTCTTGGCGCTAGTGGGGAAATAAGCGACTTTCAGGAGATTATGCGCTACCTTGATGAGCTTATCCTTAATGACAACATGTGGGATGATGGGAATTCTTTGGGACCTAAGGAGGTGCTCAACTATCTAACTCGGGTGATGTACAATAGGCGCAACAAGTTCAATCCATTGTGGAACTCGCTTGTTCTTGGTGGTGTTAAAAAGGGGCAGAAGTATCTTGGCACGGTTAACATGATTGGTATTAATTACGAAGACAACCATGTGGCAACCGGGCTTGGAAATCATCTTGCTAGGCCAATTCTCCGTGATGAGTGGAATGAAAACTTGACATTTGAAGAAGGTGTCAGGTTACTTGAAAAATGCATGCGTGTGCTATTATACCGTGATAGGTCTGCCGTCAACAAGATTCAGATATCTAAAATTACCGAAGAAGGTGCTACTGTTTTCCCGCCATTCTCTTTGAAAACATACTGGGAGTTCTCGGCCTTCAAGAATCCTACGGTTGGTGCCGAAGGGTTTCGGTTTTACTGCCTACACAGTGAGAGGAAGGTCTTCTTCACTTGTTTGCATCTTGTGAGTTGCGAAGATGAAACAGTTGCACAGGCTTTGTTTGATCTTGAGAATACCAACAATGAGCTAAAAAGTGAGCTGAAAGATTTATACATAAATGCAGCAGTTCAAATCGATGTTTCTGCCAACCGCAAGGCTGTGGTTGCATTTACTCCTTTCCGGTTGTGGAAAGGTTTCAACAAAATTCATGCCAGGCTTGTAAGGGAGCTTGAGAAGAAATTTAGTGGAAAGGATGTAATCTTGATTGCCACTCGAAGAACATTGAGGCCACCAAAGAAAGGATCTGCTGCTCAGCGCCCCCGCACCCGTACACTCACTGCTGTCCATGAGGCAATGCTGGAGGATATTGTATTACCTGCCGAGATTGTTGGGAAGCGTACTAGATACCGAACTGATGGAACCAAGATCATGAAGGTGTATTTGGACCCGAAGGAGAGAAACAATACCGAGTACAAGTTGGAGAGTTTTGCCGCTGTTTACAAGAAACTTTCAGGCAAAGATGTTGTGTTTGAGTACCCTGTTACAGAGGCTTAG | 1278 | 0.4437 | MDSVDESQRTLYPYVTGSSVVAIKYKDGILMAADMGGSYGSTLRYKSVERLKPIGKHSLLGASGEISDFQEIMRYLDELILNDNMWDDGNSLGPKEVLNYLTRVMYNRRNKFNPLWNSLVLGGVKKGQKYLGTVNMIGINYEDNHVATGLGNHLARPILRDEWNENLTFEEGVRLLEKCMRVLLYRDRSAVNKIQISKITEEGATVFPPFSLKTYWEFSAFKNPTVGAEGFRFYCLHSERKVFFTCLHLVSCEDETVAQALFDLENTNNELKSELKDLYINAAVQIDVSANRKAVVAFTPFRLWKGFNKIHARLVRELEKKFSGKDVILIATRRTLRPPKKGSAAQRPRTRTLTAVHEAMLEDIVLPAEIVGKRTRYRTDGTKIMKVYLDPKERNNTEYKLESFAAVYKKLSGKDVVFEYPVTEA | 425 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car08g01714 | 425 | ProSiteProfiles | Proteasome beta-type subunit profile. | 17 | 199 | IPR023333 | - | |
| Car08g01714 | 425 | ProSitePatterns | Ribosomal protein S7e signature. | 313 | 326 | IPR000554 | GO:0003735|GO:0005840|GO:0006412 | |
| Car08g01714 | 425 | PANTHER | 40S RIBOSOMAL PROTEIN S7 | 254 | 425 | - | - | |
| Car08g01714 | 425 | ProSitePatterns | Proteasome beta-type subunits signature. | 21 | 68 | IPR016050 | GO:0005839|GO:0051603 | |
| Car08g01714 | 425 | SUPERFAMILY | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 12 | 219 | IPR029055 | - | |
| Car08g01714 | 425 | Coils | Coil | 261 | 281 | - | - | |
| Car08g01714 | 425 | CDD | proteasome_beta_type_4 | 16 | 209 | IPR016295 | - | |
| Car08g01714 | 425 | Gene3D | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | 14 | 228 | IPR029055 | - | |
| Car08g01714 | 425 | Pfam | Proteasome subunit | 16 | 198 | IPR001353 | GO:0005839|GO:0051603 | |
| Car08g01714 | 425 | Pfam | Ribosomal protein S7e | 254 | 420 | IPR000554 | GO:0003735|GO:0005840|GO:0006412 | |
| Car08g01714 | 425 | PANTHER | 40S RIBOSOMAL PROTEIN S7 | 254 | 425 | IPR000554 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car08g01714 | Car-Chr8 | 26961363 | 26968828 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car08g01714 | 234 | 425 | Cytoplasmic Ribosomal Protein Gene Family | AT1G48830 | 73.438 | 5.72e-100 | 294 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car08g01714 | K02736 | - | gmx:100527174 | 441.81 |