Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01685 ATGGCGACGCCGTTAACGGGATTGCAACAACACATAGATGGCGGTGGCGGAGGTGTGGCGGTGCTGCCGAATCGCGTTTCTTCTTCTTCCTCCAATGGTGGCGGTGGATTCAACCGTTCCTCTTTATCGGAATCGCCAATTTTGATTTTCTCGTTTTTCCAGAAAGCGATTAGGAACGAGCTTGATGCGTTGCACCGATTAGCTATGGAGTTTGCTACCGGAGACGGTTCCGACATTCAACCTCTCTCCGAACGCTATCATTTTCTTAGGTCGATGTATAGACACCATTCCAATGCTGAAGATGAGGTGATTTTTCCAGCTCTAGATAAGCGTGTGAAGAATGTAGCACAGACATATTCTCTTGAACACAAGGGTGAAAGTAATCTTTTTGACCATTTATTTGAGCTGTTAAACTCTTGGGTTGATAATGTTGATAATGATGAAAGTTTTCGAAGGGAGTTAGCTTCCTGCACAGGAGCTCTGCAGACGTCTGTTAACCAACACATGGCTAAAGAGCAGCAACAAGTATTTCCGCTTCTTATCGAGAAGTTCTCTCTGGAGGAACAAGCATCTTTAGTTTGGCAGTTTCTTTGCAGTATTCCAGTGAATATGATGGCAGAATTTCTTCCATGGCTTTCTACATCCATATCACCCGATGAATCTCAGGATTTACGGAAGTGCTTAAGCAAGATAGTGCCAGAGGAAAAGCTTCTTCAAAAGGTTATTTTCACCTGGATGGAAGGGCGAAGTAGTGCTAACACAGTTGAAAATTGTGTAGATCATTCTCAGGTTCAATGTAGTCCTAGTCCTTTAGCTCATCAGATTGGGAAAATAAAATGTGCATGTGAGTCCACTGTGTGTGGGAAAAGAAAACATTCTACATCTATTCTAGATGTGCCTGAGACAGTAGGTTCGCATCCTATAGATGAAATATTGCTCTGGCATAATGCTATAAAAAAAGAGTTAAATGAGTTAGCAGTGGAGACCAGAAAGATACAACACTCTGGAGATTTTACTAATCTGTCTGCTTTTAATGAAAGGTTGCAATTCATTGCAGAAGTTTTCATATTTCACAGTATTGCTGAGGACAAGGTTATATTTCCGGCTGTAGATGGAGAGTTTTCTTTCTTTCAAGAGCATGCTGAAGAAGAAAGCCAATTTCATGACTTCCGATCTTTGATTGAAAGTATTCTAAATGAAGAAGCAACATCTAGTTCGGAAGTTGAACTTTATTCCAAGTTGTGCTCACATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATAATGAAGAAGTTCAgGTTCTTCCACTTGCACGGAAGCACTTTAGCTTCAAAAGGCAACGTGAACTAGTGTATGAAAGCTTGTGCATGATGCCTTTGAAATTGATTGAGCGTGTCCTGCCATGGTTTGTTGGATCATTAACTGAAGACGAAGCAGAGATATTTCTGAAAAATATACAATCGGCAGCTCCAGCAATGGATTCTGCTTTAGTCACACTCTTCTCTGGTTGGGCTTGCAAGGCTCGTAAAAATGGTCTTTGCTTGTTGTCAAATGGATCAGGGTTCTGTCCTGCTAAAAAAATTGTTCGGTCTTCTTGTACTTGTGCTTCTGCATTGTCTGGTAAAGGTTGCTCAGTATTAGTTGAATCAGATGGGACCCAAAGACCAGTAAAGCGGAACATACCGGAATTGCACAAAAATGGAGATGTCTCAAAAACACCAGACAATGAAAGTACCCAGAAATTATGTTGTGGAGCCCGGTCTTGTTGGGTGCCCGCTTTAGGGGTCAGCAGTAACAATTTGGGACTGAGTTCACTTTCTGCAGCCAAGTCCTTGCGGAGCTTCACCTCTTCTGCCCCATCTCTTAATTCTAGTCTTTTCATATGGGAAACAGACAGCAGCACGTGTGATTTTGGCGCTGCAGAAAGACCAATCGATACCATATTTCAATTCCATAAAGCTATACGCAAAGACTTGGAGTATTTAGATGTTGAATCTGGAAAGCTTTGTGATGGTGATGATACAACTATTCGGCAATTTACTGGAAGGTTCCGTCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGATATAGTTTTTCCTGCGTTGGAATCCAAAGAGACACTTCATAATGTGAGCCATTCTTACACGCTGGACCATAAGCAGGAAGAAAAATTATTTGAAGATATTTCCTGCGTTCTCTCTGAGCTTTCTGTCCTTCATGAAGCATTGCAGAGAACCCATATCTCTGAAGATTTAAGTGATAGTAATTTGGGAGTTTCTGATGCCAATGATTGTGATGATATCAGAAAGTATAATGAGCTTGCAACTAAGCTTCAAGGGATGTGTAAATCTATACGAGTGACCCTGGATCAGCATATTTTCAGGGAAGAGCTTGAGCTCTGGCCATTGTTTGGAAAACATTTCACTGTGGAAGAACAAGACAAGATAGTTGGCCGGATCATTGGAACTACAGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTGACTTCTGCACTTACACAAGATGAACAGAACAAAATGATGGACACATGGAAACAAGCAACTAAGAATACAATGTTCAATGAATGGCTAACTGAAAGCTTGATAGAGAGTCCAGGATCTGTATCACAGACAGAAACTTCAGAACATAGCACTTCTCAAAGAGGTGCCGAATATCAAGAAAGCTTGAACCTGAATGATCAGATGTTTAAGCCGGGTTGGAAAGACATATTTCGGATGAATGAGAATGAACTTGAGTCAGAAATCCGGAAGGTTTATCGTGACTCAACCCTTGATCCAAGGAGAAAGGCATATCTGGTGCAGAATCTGATGACAAGTCGCTGGATAGCCGCTCAACAGAAGTTACCTAAATCTCAATCTGGGGAATCATCTAATAAACAAATAGAAGGATGCTTACCTTCATTTCGAGACCCAGAGAAACAAGTATTTGGTTGTGAGCACTATAAGAGAAATTGCAAAGTTCGAGCTGCTTGTTGTGGCAAGTTTTATACATGCAGATTTTGTCACGACAATTCAAGTGATCACTCAATGGATAGAAAAGCAACATTGGAAATGATGTGTATGGGCTGCCTGACTATACAGCCAGTTGGGCCCGTTTGCATGTCACCTTCATGTAATGGACTTTCAATGGCAAAGTACTACTGTAATATATGCAAATTTTTTGATGACGAAAGGAATGTTTACCATTGCCCATTTTGCAATATATGCCGTGTTGGACAAGGGCTTGGCGTTGATTACTATCATTGTATGAAATGCAATTGTTGCGTGGGAATAAAATCAGTGATTCATAAGTGCCTCGAGAAAGGCTTAGAAATGAACTGCCCAATTTGCTGCGATGACCTGTTCACATCAAGTGCAACGGTCAGAGCTCTAGCTTGTGGACATTACATGCATTCATCTTGTTTTCAGGCATACACTTGCAGTCACTATACCTGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCATTGTTGGCTGCTGAGCAGCTCCCTGAAGAGTACAGGGACCGCTATCAGGACATACTCTGCCATGACTGTGATCGAAAGGGAACTTCACACTTCCACTGGTTATATCATAAATGTGGATCTTGTGGCTCGTATAATACCCGGGTGATCAAGAATGAATCAACAAATTCTAGCTGCCCTTAA 3714 0.4146 MATPLTGLQQHIDGGGGGVAVLPNRVSSSSSNGGGGFNRSSLSESPILIFSFFQKAIRNELDALHRLAMEFATGDGSDIQPLSERYHFLRSMYRHHSNAEDEVIFPALDKRVKNVAQTYSLEHKGESNLFDHLFELLNSWVDNVDNDESFRRELASCTGALQTSVNQHMAKEQQQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSISPDESQDLRKCLSKIVPEEKLLQKVIFTWMEGRSSANTVENCVDHSQVQCSPSPLAHQIGKIKCACESTVCGKRKHSTSILDVPETVGSHPIDEILLWHNAIKKELNELAVETRKIQHSGDFTNLSAFNERLQFIAEVFIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFHDFRSLIESILNEEATSSSEVELYSKLCSHADHIMETIQRHFHNEEVQVLPLARKHFSFKRQRELVYESLCMMPLKLIERVLPWFVGSLTEDEAEIFLKNIQSAAPAMDSALVTLFSGWACKARKNGLCLLSNGSGFCPAKKIVRSSCTCASALSGKGCSVLVESDGTQRPVKRNIPELHKNGDVSKTPDNESTQKLCCGARSCWVPALGVSSNNLGLSSLSAAKSLRSFTSSAPSLNSSLFIWETDSSTCDFGAAERPIDTIFQFHKAIRKDLEYLDVESGKLCDGDDTTIRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISCVLSELSVLHEALQRTHISEDLSDSNLGVSDANDCDDIRKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLTESLIESPGSVSQTETSEHSTSQRGAEYQESLNLNDQMFKPGWKDIFRMNENELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKSQSGESSNKQIEGCLPSFRDPEKQVFGCEHYKRNCKVRAACCGKFYTCRFCHDNSSDHSMDRKATLEMMCMGCLTIQPVGPVCMSPSCNGLSMAKYYCNICKFFDDERNVYHCPFCNICRVGQGLGVDYYHCMKCNCCVGIKSVIHKCLEKGLEMNCPICCDDLFTSSATVRALACGHYMHSSCFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEQLPEEYRDRYQDILCHDCDRKGTSHFHWLYHKCGSCGSYNTRVIKNESTNSSCP 1237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01685 1237 PANTHER CHY ZINC FINGER PROTEIN 25 1237 - -
Car08g01685 1237 CDD Hr-like 309 438 - -
Car08g01685 1237 CDD RING-H2_Pirh2 1120 1163 - -
Car08g01685 1237 Pfam Zinc-ribbon 1168 1225 IPR039512 -
Car08g01685 1237 Pfam CHY zinc finger 992 1067 IPR008913 GO:0008270
Car08g01685 1237 Gene3D nmb1532 protein domain like 642 879 - -
Car08g01685 1237 Gene3D - 1192 1234 - -
Car08g01685 1237 ProSiteProfiles Zinc finger CHY-type profile. 985 1054 IPR008913 GO:0008270
Car08g01685 1237 Gene3D nmb1532 protein domain like 309 457 - -
Car08g01685 1237 Gene3D nmb1532 protein domain like 45 198 - -
Car08g01685 1237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1114 1165 IPR013083 -
Car08g01685 1237 SUPERFAMILY CHY zinc finger-like 985 1049 IPR037274 GO:0008270
Car08g01685 1237 SMART ring_2 1121 1162 IPR001841 -
Car08g01685 1237 MobiDBLite consensus disorder prediction 19 38 - -
Car08g01685 1237 Pfam Ring finger domain 1120 1162 IPR001841 -
Car08g01685 1237 SUPERFAMILY RING/U-box 1118 1173 - -
Car08g01685 1237 ProSiteProfiles Zinc finger CTCHY-type profile. 1057 1120 IPR017921 -
Car08g01685 1237 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 25 1237 - -
Car08g01685 1237 SUPERFAMILY Zinc hairpin stack 1058 1113 IPR037275 -
Car08g01685 1237 ProSiteProfiles Zinc finger RING-type profile. 1121 1163 IPR001841 -
Car08g01685 1237 Pfam Hemerythrin HHE cation binding domain 646 809 IPR012312 -
Car08g01685 1237 Pfam Hemerythrin HHE cation binding domain 306 440 IPR012312 -
Car08g01685 1237 Pfam Hemerythrin HHE cation binding domain 55 180 IPR012312 -
Car08g01685 1237 MobiDBLite consensus disorder prediction 23 38 - -
Car08g01685 1237 CDD Hr-like 648 808 - -
Car08g01685 1237 MobiDBLite consensus disorder prediction 878 897 - -
Car08g01685 1237 CDD Hr-like 49 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01685 Car-Chr8 26672128 26681474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01685 1 1236 C2H2 Transcription Factor Family AT3G18290 66.166 0.0 1655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01685 K16276 - gmx:100791354 2150.94