Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01676 ATGGATAAACTTATCCACATAATATTTTGCTTCTGTTTAACTATTTTGCCACAAATATCACACTGTGAAACACAACAAGCTCACAACTATTCCATTTGTAGAGAACTATCATACAACTGTGGAAAACTCTCCAACATCTCTTATCCATTTTGGGGACATAACCGTCCTTCTCATTGCGGCGGCGGCGACTTCTTTAATCTCAACTGCTTCATTGATCAAAACAAAAATGAAACTACTACAATTCTATTAGGCTCACAAAATTTCACAGTACTTAGTATTGATCTTCAAACTTATACCATGAAAATGAAGCGAACCGATCTTTCATTCGATGCTTGTGCGCCGCAATTCAACGACACTTATTTGAGTCCAACTATGTTCAAGTTTCCTACAAGAACAAAGAACATAAGCATATTCTATAATTGTTCATATGATGTAATATCTTATGTTAATGACTACCAATCTTTGTGTGGATCTCAGAATATTGCTATATGTTTTGAGGATTCAGAAGGTAAGTTATTGGAAATAATTCCAATGTTAAAGGGGTGTGGAAGACATATCACAGTACAAGCAGATTATGCTTTTGAACCTGCTACTTTTCTTGGGGTAATTGGAAATGATGATCTTGATCAAATTTTAGATGAGGGGTTTCAGGTGAAGTATGTTGTGAATGAGGAGTGTATAAGATGCTTGGGAAGTGAAGGGTATTGTTGGAATAATACTAATTTTGATAATGTTCAATCTTGCTATTATGTTTATTGTCCTCATGGTTATGCTTCCTCTGCCACACAATGTTCTGTTATTAAAAGTGTCCAGTTGAGAAGGCAAGAGAAAATGAAAATCATTATAGGAAGTGCAGGTGCAGCATTTGTAGGATTATTAATATGTATCACTATCTTTTGTTTCAAATACAAGTCAACAAAAAATAACCAAGACATTGAAGCATTCTTAAAAACTCATGAAGCCTTTACTCTAAGAAGATACAAATTCTcacatatcaagaaaatgaccaacaacttcaaagtcaaactaggagaaggtggttatggtgctgtatacaaaggaaagctactcaatgattgccctgtcgctgtgaagctattgaaggcatccaaaggaaatggtgaagattttatgaatgaggtttctagcatcactaaaacctctcatgttaatgttgttgctcttcttggattttgttttgaaggacggaaaaaagctctcatctatgaattaatgtccaatggttcgctcgacaaatttattcacaataagggacttgaaactattggagcgtcgttgagtttggagattctttatcaaattgctaaaggaatagctcgagggctagagtacttgcatagaggatgtagtactcgaattctacattttgacatcaaaccacataatattctcttggatgagaatttttgtccaaagatatcagattttggactatcaagactttgcacaaagaaagagagcattatttccatgtcaaacgctagaggcacaataggatatgtagcacctgaactatggaatagaaattttggaggagtttcacataagtctgatgtttatagttacggaatgatgttgttggaaatggtgggagggaggaaaaaccttaatgttgatgcaagtcacacaagtgagatatactttcctcattggatatacaagaagcttgatcaaggaaatgatttgagatcaaatgaagtgattgccatagaagaagaagatgagattgcaagaagaatgactattgtgggtttgtggtgcattcaaacatttccaaatgatagaccttcaatgagtaaagtgattgaaatgttagagggcaacatgaactccttggaaataccaccaaagCCTATGCTTTCTTCTCCTACTAGAACAGTACCAGAATCTTCAGTTTCATGA 1923 0.1862 MDKLIHIIFCFCLTILPQISHCETQQAHNYSICRELSYNCGKLSNISYPFWGHNRPSHCGGGDFFNLNCFIDQNKNETTTILLGSQNFTVLSIDLQTYTMKMKRTDLSFDACAPQFNDTYLSPTMFKFPTRTKNISIFYNCSYDVISYVNDYQSLCGSQNIAICFEDSEGKLLEIIPMLKGCGRHITVQADYAFEPATFLGVIGNDDLDQILDEGFQVKYVVNEECIRCLGSEGYCWNNTNFDNVQSCYYVYCPHGYASSATQCSVIKSVQLRRQEKMKIIIGSAGAAFVGLLICITIFCFKYKSTKNNQDIEAFLKTHEAFTLRRYKFSHIKKMTNNFKVKLGEGGYGAVYKGKLLNDCPVAVKLLKASKGNGEDFMNEVSSITKTSHVNVVALLGFCFEGRKKALIYELMSNGSLDKFIHNKGLETIGASLSLEILYQIAKGIARGLEYLHRGCSTRILHFDIKPHNILLDENFCPKISDFGLSRLCTKKESIISMSNARGTIGYVAPELWNRNFGGVSHKSDVYSYGMMLLEMVGGRKNLNVDASHTSEIYFPHWIYKKLDQGNDLRSNEVIAIEEEDEIARRMTIVGLWCIQTFPNDRPSMSKVIEMLEGNMNSLEIPPKPMLSSPTRTVPESSVS 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01676 640 ProSiteProfiles Protein kinase domain profile. 337 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g01676 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Car08g01676 640 SMART serkin_6 337 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g01676 640 PANTHER GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE, PROTEIN KINASE RLK-PELLE-LRK10L-2 FAMILY-RELATED 7 639 - -
Car08g01676 640 MobiDBLite consensus disorder prediction 620 640 - -
Car08g01676 640 Pfam Wall-associated receptor kinase C-terminal 175 250 IPR032872 -
Car08g01676 640 Pfam Wall-associated receptor kinase galacturonan-binding 33 103 IPR025287 GO:0030247
Car08g01676 640 Gene3D Phosphorylase Kinase; domain 1 307 411 - -
Car08g01676 640 Gene3D Transferase(Phosphotransferase) domain 1 412 621 - -
Car08g01676 640 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Car08g01676 640 PANTHER RUST RESISTANCE KINASE LR10-RELATED 7 639 IPR045874 GO:0004672
Car08g01676 640 SUPERFAMILY Protein kinase-like (PK-like) 319 613 IPR011009 -
Car08g01676 640 Pfam Protein tyrosine and serine/threonine kinase 339 612 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01676 Car-Chr8 26592790 26596346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01676 22 639 Receptor kinase-like Gene Family AT1G66910 38.272 3.12e-142 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Car08g01676 PK_Tyr_Ser-Thr 4.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01676 - - gmx:106794113 700.664