Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01662 ATGCCTATTATGACTGGACAAATGAAATGGAGAAGACCCATAAACAAATTAAGACATCCCATTTCAAATACTGAACACCAAAGTTCACAGCTTTACACCATAGTCCAGACCACTAACTGCAAATCCACAATCTCCAGTCTCTTTTCATCTTTCTCCaacaacaacacacccaatgaaaccaaacataacattaaacaaaacaaaacaaaaaacaacaaTGGCAATACCAATTATTTCAGAGGACTTGGCTGCACCACCGGTACATCGCATCAGGTGTCAGTACCGGCGGTAATTAGCTCCTCTGAAGATTGGCAAGGGAAGAAGAACAGAAAAAAGAAACACAGAAGGAACAGTAACAGTAAAATCAACAAAACATGTCATGGTGTTGTTGATGATGTTCCTTTTCAAAGTTCTTCTTCTTTTGGTGCTACTACCTGTGTTGATTTTCAAGATGTTTGGTGTGGACCTGGAATTGGGTTTTCATCTGATGCTTCTTCTGTATCTGTGGATTGTGTTGTGGCAAGAAAGAATCTGTCTTCAAGAGGAAAACTTGATGGGGAAAGGATAACACATAGGGAGCGTTCGTCTTATTTTGGAAGACGCAGTGTTAATCCGGAAAATTTATCTTTTTTGGATGATGATGATTCTGATGTTTTCTTAGCACAACATGGATTAGAGTCTTTTGGTAATGGTAGATTTTTTCGACATGCTTCGCATAATTCCTCCGATGGTCTTGCTGAGATAATGATAATTCAAGGAAGACTAATGGGGGGACGATTTAATTCACGCGACCAATTTAGAGACTGGAGACTTGATGTTGATAATATGTCGTATGAGCAATTGCTTGAGCTTGGTGAGAGAATTGGTTATGTGAAAACTGGACTTAAAGAAGATGAGATGAGGCACAACATAAGGAAAATCAAGCTTTTGATTTCAAATGATACATCAAAGCAACAAATAGACAAAAAGTGTAGCATTTGTCAGGAGGAGTATGAATTAGATGATGAATTGGGAAGGTTAAATTGTGAACACAGCTATCACTTTCATTGTATAAAACAATGGCTTGTGCTTAAAAACTTCTGTCCAGTTTGTAAGCAAGAAGTCGCGGTTCGACATTGA 1119 0.3646 MPIMTGQMKWRRPINKLRHPISNTEHQSSQLYTIVQTTNCKSTISSLFSSFSNNNTPNETKHNIKQNKTKNNNGNTNYFRGLGCTTGTSHQVSVPAVISSSEDWQGKKNRKKKHRRNSNSKINKTCHGVVDDVPFQSSSSFGATTCVDFQDVWCGPGIGFSSDASSVSVDCVVARKNLSSRGKLDGERITHRERSSYFGRRSVNPENLSFLDDDDSDVFLAQHGLESFGNGRFFRHASHNSSDGLAEIMIIQGRLMGGRFNSRDQFRDWRLDVDNMSYEQLLELGERIGYVKTGLKEDEMRHNIRKIKLLISNDTSKQQIDKKCSICQEEYELDDELGRLNCEHSYHFHCIKQWLVLKNFCPVCKQEVAVRH 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01662 372 MobiDBLite consensus disorder prediction 51 75 - -
Car08g01662 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 6 372 IPR045191 GO:0061630
Car08g01662 372 Pfam Ring finger domain 323 365 IPR001841 -
Car08g01662 372 SMART ring_2 324 364 IPR001841 -
Car08g01662 372 SUPERFAMILY RING/U-box 323 369 - -
Car08g01662 372 ProSiteProfiles Zinc finger RING-type profile. 324 365 IPR001841 -
Car08g01662 372 MobiDBLite consensus disorder prediction 98 122 - -
Car08g01662 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 371 IPR013083 -
Car08g01662 372 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 6 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01662 Car-Chr8 26465122 26468717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01662 69 279 C3H Transcription Factor Family AT1G73760 43.243 5.58e-42 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01662 - - gmx:100818517 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01662 08 26465122 26468717 Car06g00201 06 2184451 2188100 ECH
Car08g01662 08 26465122 26468717 Car08g01662 08 26465122 26468717 ECH