Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01659 ATGGATGTTAACTCTTCTTCCATAAGGGAGCTGGGTTTCTCGTTCGAGCTGCTTCCCGTTCGAGCTGGGTTTGTCGTTCGAGCTGCTTCCCTTCTTCTTGTCCGAACCCTACTTCTTGTCCGAACCCTCCGCATCCCTGCTTCGCTCCGCCGTGATGATCGCTATCTCTTAAGAAATGTAAAGAAAATGCCAGGATCTAGTTGGATAAGAAAATGTCTCAAAGGTGTACGCTGGCCTGGGAATTTGGACAGAGATCCAAAGGGCTGGAACATGCCTCCTAAACAAAACCAATTGAAAATTGCAATCAGAAGCAGAACCTCATTTTCCAAGTTTGTCAAGTTGAATTTTTATCCTCCTGTGAATGAGATCATTGAACAATGTGGAAAATTCCATTTGCTAAACCGATTGTTGGAACGGCTATTTGCACGAAATCACAAAGTTCTGATCTTCAGTCAGTGGACTAGAGTGTTGGATATAATGGATTATTATTTCAGTGAAAAAGGCTTCGAAGTTTGCAGGATTGATGGTTCAGTGAAACTGGAGGATAGGAAACGGCAGAACCAGGACTTCAATGATACAAACAGCAATTGCCGAATCTTCCTTCTTTCTACTAGGGCTGGTGGATTGGGAATTAACCTCACTGCAGCTGACACTTGCATTCTTTATGACAGTGATTGGGTACTTTTGACTTTTCCTGTTTGGCATTTATCTATTTGCTTCACAGCATTTAACTTACACTATGCTTACGACTTCATTGTACTACAGAATCCTCAAATGGATTTACAGGCCATGGATAGATGTCATAGAATCGGTCAAACAAAGCCTGTTCATGTTTACAGGCTCGCAACTGCTCAATCAGTAGAGGGTCGAATGTTAAAAAGAGCTTTCAACAAGTTGAAGCTTGAGCATGTGGTGATAGAGAAAGGACAGTTTCATCAAGAGCGTACAAAGCCTGCCATTGTGGATGAGATGGAGGTTTGTGTCAAAGGCTTGGCTGAAATTTTTAGGCTTGGCTCATTTAAAGATGAAGCAAAAGAGATTGTTGAGATGTCAACAGTGGAAGCCTATCGCATGGCTATGAAAAGTGTGGTTAGATGGGTGAGAATGAACATGAAACCTAACAAGACTAGAGTCTTCTTCACTAGCATGTCACCTTCTCATGGAAGGCAAGTTTAG 1176 0.4226 MDVNSSSIRELGFSFELLPVRAGFVVRAASLLLVRTLLLVRTLRIPASLRRDDRYLLRNVKKMPGSSWIRKCLKGVRWPGNLDRDPKGWNMPPKQNQLKIAIRSRTSFSKFVKLNFYPPVNEIIEQCGKFHLLNRLLERLFARNHKVLIFSQWTRVLDIMDYYFSEKGFEVCRIDGSVKLEDRKRQNQDFNDTNSNCRIFLLSTRAGGLGINLTAADTCILYDSDWVLLTFPVWHLSICFTAFNLHYAYDFIVLQNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFNKLKLEHVVIEKGQFHQERTKPAIVDEMEVCVKGLAEIFRLGSFKDEAKEIVEMSTVEAYRMAMKSVVRWVRMNMKPNKTRVFFTSMSPSHGRQV 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01659 391 PANTHER SNF2/RAD54 HELICASE FAMILY 236 320 - -
Car08g01659 391 PANTHER SNF2/RAD54 HELICASE FAMILY 115 226 - -
Car08g01659 391 Pfam Helicase conserved C-terminal domain 133 271 IPR001650 -
Car08g01659 391 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 340 389 IPR026057 GO:0016740
Car08g01659 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 317 IPR027417 -
Car08g01659 391 SMART helicmild6 158 271 IPR001650 -
Car08g01659 391 Gene3D - 97 365 IPR027417 -
Car08g01659 391 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 132 317 IPR001650 -
Car08g01659 391 PANTHER BNAC07G16550D PROTEIN 115 226 - -
Car08g01659 391 CDD SF2_C_SNF 118 281 - -
Car08g01659 391 PANTHER BNAC07G16550D PROTEIN 236 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01659 Car-Chr8 26447137 26450094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01659 126 291 RAD5 or RAD16-like Gene Family AT5G43530 32.143 1.72e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01659 K19001 - gmx:100777687 326.25