Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01643 ATGGCAGAATTAGATCCGTCGAAGAAAGTAGCTGATAGGTATCTCAAACGTGAGGTTCTTGGTGAAGGTACCTATGGTGTCGTTTACAAAGCCATTGATACTCAGACAGGACAGACGGTTGCTATTAAGAAGATTCGGATTGGCAAGCAAAAAGAAGGAGTGAATTTTACAGCTCTTAGAGAAATTAAATTGCTTAAAGAGCTCAACGATCCAAATATTATTGAGTTGATTGATGCATTCCCACATAAAGGGAATTTGCATCTTGTGTTTGAATTCATGGAGACAGACCTTGAAGCTGTCATAAGAGACCGGAATATTTTCCTTTCACCGGGTGATATAAAATCTTACCTTCAAATGACGCTAAAAGGGCTTGCTCATTGTCACAAAAGATGGATATTGCATAGGGATATGAAACCAAATAATTTGTTGATAGGACCCAATGGACAGCTGAAACTTGCAGATTTTGGCTTAGCACGGATATTTGGAAGTCCGGATCGCAGGTTCACCCATCAGGTGTTTGCGCGGTGGTATAGAGCACCTGAGCTATTATTTGGTACCAAGCAATATGGCCCAGGGGTAGATGTTTGGGCTGCAGCCTGTATATTTGCTGAGCTTCTTCTTCGCCGACCTTTTTTGCAGGGCTCAAGTGATATTGATCAATTAGGGAAGATATTCGCGGCATTTGGAACTCCATCTTCTTCTCAATGGCCTGATATGGTATACCTTCCTGATTATGTTGAATATCAATACGTACCTTCCCCTCCTTTGCGGTCCCTATTTCCAATGGCAAGTGATGATGCTTTAGACTTGTTGTCTAAGATGTTTACATATGACCCAAAAGAGAGAATTTCAGTGCAGCAGGCATTAGAACATAGATACTTTTCTTGTCCTCCTCTGTGCACAATTCCGGATAAGCTTCCAAGGCCACCCCCTAAGAAGGAAACTAAGGCATCGGATTTGAATCCAAATGAGGGTCCAATTGTCTTATCACCTCCTAGAAAGACTAGGAGAGTAATGCCAGGGCGCGATGGACTTGAAGGCAATTCATTGCAAGGAGATAAGATTGATGATAATCATAGTAACTTCAAACAGTCAATTGATGATACTACAGGGAAGAATGACCCTGCCCCAATGTCACTAGATTTTTCTGTCTTTGGATTAAAACCTCCAAATAGACCAACAATTAACAGTGCTGACAAAACACATTTAAAAAGAAAATTAGATTTAGAATTCCAGTAA 1239 0.4084 MAELDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRIGKQKEGVNFTALREIKLLKELNDPNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPGDIKSYLQMTLKGLAHCHKRWILHRDMKPNNLLIGPNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGPGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPSSSQWPDMVYLPDYVEYQYVPSPPLRSLFPMASDDALDLLSKMFTYDPKERISVQQALEHRYFSCPPLCTIPDKLPRPPPKKETKASDLNPNEGPIVLSPPRKTRRVMPGRDGLEGNSLQGDKIDDNHSNFKQSIDDTTGKNDPAPMSLDFSVFGLKPPNRPTINSADKTHLKRKLDLEFQ 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01643 412 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g01643 412 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Car08g01643 412 MobiDBLite consensus disorder prediction 349 363 - -
Car08g01643 412 MobiDBLite consensus disorder prediction 304 412 - -
Car08g01643 412 MobiDBLite consensus disorder prediction 398 412 - -
Car08g01643 412 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Car08g01643 412 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g01643 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Car08g01643 412 Gene3D Transferase(Phosphotransferase) domain 1 95 308 - -
Car08g01643 412 SUPERFAMILY Protein kinase-like (PK-like) 10 296 IPR011009 -
Car08g01643 412 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 357 - -
Car08g01643 412 ProSitePatterns Protein kinases ATP-binding region signature. 20 49 IPR017441 GO:0005524
Car08g01643 412 PANTHER CELL DIVISION PROTEIN KINASE 9 357 - -
Car08g01643 412 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01643 Car-Chr8 26251618 26257172 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01643 4 411 Core Cell Cycle Gene Families AT1G73690 72.794 0.0 602
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Car08g01643 Pkinase 1.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01643 K02202 - gmx:100814263 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01643 08 26251618 26257172 Car08g01643 08 26251618 26257172 ECH