Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01642 ATGGCGGATATCGAGGAGGACATCCGTGCTTTACAGCTTGAGTCAGCAGACACAGCAGAAGACAATAATGGGGTTGTAAGTCCAGATGATGGAAAGAGAGAAGTCGAGGAATCTATTAATACAGATCAAGAAGTTGAAGAATCTGTTAATACAGATGAAGATCCAAAGCAGGAGGTTCAGGAACAATCTATTAAAACTGAACTAAAAGTTACGGATAAGGAAATTCCTCCGGTGCAAGATGAAGAAGATGATGTGGAGGTAGCTACCAAAAGACACTTAAATGTTGTGTTTATTGGTCATGTGGATGCTGGCAAGTCTACAACAGGAGGCCAGATACTTTTCCTCAGTGGTCAGGTTGATGAACGGACTATCCAAAAGTACGAGAAAGAAGCCAAGGACAAAAGTAGAGAAAGCTGGTATATGGCTTACATAATGGACACAAATGAGGAGGAGAGGGTAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACATTTTGAGACGGAGACATCAAGGTTTACAATTTTGGATGCACCAGGTCACAAGAGTTATGTCCCTAACATGATCAGTGGTGCATCTCAAGCTGATATTGGAGTCTTGGTAATTTCTGCTCGAAAGGGAGAATTTGAAACTGGATATGAGAGAGGTGGTCAAACCCGTGAACATGTTCAGCTTGCAAAAACACTGGGTGTGTCTAAGCTGCTTGTTGTTGTTAATAAAATGGATGATCCTACAGTTAAGTGGTCAAAAGAAAGGTATGACGAAATTGAGTCAAAGATGATACCATTTCTTAAGCAATCAGGTTACAATGTGAAGAAAGATGTCCTGTTTTTACCTATATCTGGGCTGATTGGTGCAAACCTAAAAACAAGAATGGATAAAAGTATTTGTCCATGGTGGGATGGTCCTTGCCTATTTGAAGCTCTTGATGCCATTGAAATTCCTCTACGAGATCCTAATGGTCCTTTCAGGATGCCTATACTCGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTCGAATCTGGTAGTATTCGGGAGGGAGATTCCTTGGTGATTATGCCAAATAAGGATCCAGTGAAAGTTGTTGCCATATATATTGATGAGAATCGGGTTAAACGTGCTGGACCTGGTGAAAACTTACGGGTCAGAATATCTGGTGTTGAAGAAGAAGACATATCATCTGGGTTTGTCCTGTCTAGTACCGCAAATCCAATACCGGCTGTTACTGAGTTTGTTGCCCAGCTGGCGATCCTTGAATTGCTGGACAATGCAATTTTTACTGCTGGGTACAAGGCTATTTTGCACGTCCACTCTGTAGTTGAAGAATGTGAGGTTATTGAGCTCATACATCAAATTGATCCAAAGACAAAGAAGCCTATGAAAAAGAAAGTTCTCTTTGTGAAAAACGGTGCAGGTGTTGTGTGCCGAATTCAGGTTAGTAACTCCATATGCATTGAGAAATTCTCTGACTTTCCACAACTTGGGAGATTCACTCTGCGCACGGAAGGAAAAACTGTTGCAGTGGGAAAAGTCAACGGTTTTTAA 1551 0.4139 MADIEEDIRALQLESADTAEDNNGVVSPDDGKREVEESINTDQEVEESVNTDEDPKQEVQEQSIKTELKVTDKEIPPVQDEEDDVEVATKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETSRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLLVVVNKMDDPTVKWSKERYDEIESKMIPFLKQSGYNVKKDVLFLPISGLIGANLKTRMDKSICPWWDGPCLFEALDAIEIPLRDPNGPFRMPILDKFKDMGTVVMGKVESGSIREGDSLVIMPNKDPVKVVAIYIDENRVKRAGPGENLRVRISGVEEEDISSGFVLSSTANPIPAVTEFVAQLAILELLDNAIFTAGYKAILHVHSVVEECEVIELIHQIDPKTKKPMKKKVLFVKNGAGVVCRIQVSNSICIEKFSDFPQLGRFTLRTEGKTVAVGKVNGF 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01642 516 Gene3D Translation factors 409 516 - -
Car08g01642 516 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 90 319 IPR000795 GO:0003924|GO:0005525
Car08g01642 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 325 IPR027417 -
Car08g01642 516 MobiDBLite consensus disorder prediction 1 62 - -
Car08g01642 516 Coils Coil 1 21 - -
Car08g01642 516 Pfam Elongation factor Tu domain 2 334 400 IPR004161 GO:0005525
Car08g01642 516 CDD EF1_alpha 94 314 - -
Car08g01642 516 Gene3D - 71 314 IPR027417 -
Car08g01642 516 Gene3D Translation factors 319 404 - -
Car08g01642 516 SUPERFAMILY Translation proteins 313 406 IPR009000 -
Car08g01642 516 CDD eRF3_C_III 408 513 - -
Car08g01642 516 PANTHER TRANSLATION FACTOR 3 510 - -
Car08g01642 516 PANTHER BNAA06G12300D PROTEIN 3 510 - -
Car08g01642 516 PRINTS GTP-binding elongation factor signature 94 107 IPR000795 GO:0003924|GO:0005525
Car08g01642 516 PRINTS GTP-binding elongation factor signature 173 183 IPR000795 GO:0003924|GO:0005525
Car08g01642 516 PRINTS GTP-binding elongation factor signature 189 200 IPR000795 GO:0003924|GO:0005525
Car08g01642 516 PRINTS GTP-binding elongation factor signature 233 242 IPR000795 GO:0003924|GO:0005525
Car08g01642 516 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 411 514 IPR009001 -
Car08g01642 516 Pfam Elongation factor Tu GTP binding domain 90 292 IPR000795 GO:0003924|GO:0005525
Car08g01642 516 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 146 161 IPR031157 -
Car08g01642 516 CDD eRF3_II 321 402 - -
Car08g01642 516 Pfam Elongation factor Tu C-terminal domain 407 514 IPR004160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01642 Car-Chr8 26232030 26242387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01642 90 511 Eukaryotic Initiation Factors Gene Family AT5G60390 37.647 2.85e-96 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01642 K03267 - gmx:100784412 875.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01642 08 26232030 26242387 Car08g01642 08 26232030 26242387 ECH