Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01626 ATGGGCATCAAGGATCTTCTCAGATTCATGAAGCCTTACGTTGAACCCATTAACATTAAGAACTATGCTGGTAAACGTGTGGGTATTGATGCTTATTCATGGCTTCACAAAGGGGCTTATTCATGTAGTATGGAGCTGTGTCTTGATTCTGATAGTGAAAGGAAATTGCGGTACATTGAATACTTTATGCATAGAGTGAATCTACTTCGGTATTATAAAGTAACACCAGTTGTTGTTTTTGATGGTGGCAATGTTCCTTGTAAGGCAGCAACTGAGAAAGAGAGGAATAGAAAAAGAAATGCTAATCGTGAGTTGGCAATGGCTAAGCTCAAAGAAGGGAATGTTAATGCTGCTTCCGAGTTATTTCAGAGAGCAGTGAATATTACTCCTCATATGGCTCATAAACTAATTCAGACTTTGAAATCAGAGAACATTGAGTTTGTTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCATACTTGTCCAACCTCGAAATCGAAAAAGGCGGAATTGAAGCTGTGATCACAGAAGATAGTGATCTGATAGCTTATGGTTGTCCATCTATTATTTTTAAAATGGATCGTGAGGGGAACGGCGAAAGAATAGAGTTAAAGAAGGTTTTTTCTGTGGAATCTTGTAAACCATCGTTTCGGAGTTTTGATATGAAACTCTTCACAGGTATGTGTGTCTTAGCTGGTTGTGATTTTCTTCCATCTGTTCCTGGCATAGGTGTTGCCCGAGCTCATGCCTTAGTTTCGAAGTATCGGAACTTGGATCGTATCTTATCTGTTCTTAAGTTCGAGAAAGGCGATCAAATGCCTGAAGGTTACGCCAAATCCTTCAAAGATGCACTTGCTGTTTTTCACCATGCTCGGATATATGATATCAACACGAAAGAGCTCAAGCACATGAAGCCTCTACCAGAAAATTTTCTCGAGTCACTCGACACAAACCTCGATTTTTTGGGACCAGAAATTCCCTCAACTATAGTCATAGCAATAGCAGAAGGAAACTTGAATCCATCAACTAAGGAAGCATTTGATAAGTTTGAATGTTCTAGACTTCCTTTGCACCCTATTGATCCACAAACCATTGTTCAACACAAGAAAAGTGAAGTTCTTGCTCCATTTAAACAGGAGAATTGTTTTTCAATCTTTGGCTCCCATAACAACAGTGAAAATTATACAGTGACAAGGATCTCAGATAAAGATAAGTATTCCAATGAAGCATTGGCACTTGAGAAACTAATCATGCCATTGACAACAAATGAAACAATAAAGAAAACCATTACATCTAATGACACACCTTTGAAGGTTCCTAACAACAACCCTTTTAGAATAAGAAAACATGAAGAGGAAATAAATTTGGTTCAGAAAGAGGACACAATTGAAGAAATTTCAATTGTCAGCAGTGTGGAATATATTGATATTGATACTTACATGTCACCAAATAAATTTCAAGAAGAAGGGTCTAAAAATTTATCAAGGAAAAGGAAATTTGAGAACATTTGCTTAGAGAAACTTGAAGAAACTGATGAACAGGTTTCAGGAGTGACAGAAGTGGAAAATTGTGATGCTTTATGCTTGAATGTGGAGTCACAAGAGAGTGTAAAGTCTAAGATTAGGAATAATGTTGATTTGAAAGGAAGTGAAAAGAAATCCAAGATAAGCAACTCCAAGAAAAAGGGGAGCAACATTAGAACTATTCTGAATTTCTTTTCAAGAGTGTAA 1731 0.3715 MGIKDLLRFMKPYVEPINIKNYAGKRVGIDAYSWLHKGAYSCSMELCLDSDSERKLRYIEYFMHRVNLLRYYKVTPVVVFDGGNVPCKAATEKERNRKRNANRELAMAKLKEGNVNAASELFQRAVNITPHMAHKLIQTLKSENIEFVVAPYEADAQLAYLSNLEIEKGGIEAVITEDSDLIAYGCPSIIFKMDREGNGERIELKKVFSVESCKPSFRSFDMKLFTGMCVLAGCDFLPSVPGIGVARAHALVSKYRNLDRILSVLKFEKGDQMPEGYAKSFKDALAVFHHARIYDINTKELKHMKPLPENFLESLDTNLDFLGPEIPSTIVIAIAEGNLNPSTKEAFDKFECSRLPLHPIDPQTIVQHKKSEVLAPFKQENCFSIFGSHNNSENYTVTRISDKDKYSNEALALEKLIMPLTTNETIKKTITSNDTPLKVPNNNPFRIRKHEEEINLVQKEDTIEEISIVSSVEYIDIDTYMSPNKFQEEGSKNLSRKRKFENICLEKLEETDEQVSGVTEVENCDALCLNVESQESVKSKIRNNVDLKGSEKKSKISNSKKKGSNIRTILNFFSRV 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01626 576 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 571 IPR006084 -
Car08g01626 576 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Car08g01626 576 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 1 571 - -
Car08g01626 576 ProSiteProfiles TPR repeat profile. 99 132 IPR019734 GO:0005515
Car08g01626 576 Gene3D - 218 291 - -
Car08g01626 576 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Car08g01626 576 SMART xpgn3 1 102 IPR006085 GO:0004518
Car08g01626 576 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Car08g01626 576 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Car08g01626 576 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Car08g01626 576 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Car08g01626 576 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Car08g01626 576 CDD H3TH_FEN1-like 225 295 - -
Car08g01626 576 Coils Coil 91 111 - -
Car08g01626 576 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Car08g01626 576 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Car08g01626 576 SMART xpgineu 141 213 IPR006086 GO:0004518
Car08g01626 576 Gene3D - 1 213 - -
Car08g01626 576 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 350 IPR036279 -
Car08g01626 576 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01626 Car-Chr8 25953065 25957391 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01626 1 315 Core DNA Replication Machinery Family AT5G26680 24.233 1.49e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01626 K10746 - gmx:100817932 824.698