Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01612 ATGGAGAGGGAATTCCTTGGATTAAATTCCAAAAATATTGCATGGTTTAATATGAAAGGAGATGCTTCCAACAAACCAAAAGACCCAGTGAGGAGTTCAGGAATGCAGTGGTCATTCTCAAATAAGGCTTCAACCGTTCCTCAATTCTTGTCCTTCAAGAACAACACTCATGAAGATAGGTCAAGAAATACTACTATGGATCCACTAGCATCATCTGGATATATGACAATATCAACTAAAGATGCTTTTGATTCTAACCAGAAATCATTCTTGGCTGTCACACAGGAAAGTTTGTCCATAGGAAAGCAAGTAACAAACAAGCTTGGAATGACAATATATCCTATGCAATGTTCTGATCATGCACAATCAATTTGCAATCAAGAAACAAGAATATTTTCAGTTTCAAACCAATCTAATCAAATGTGTTCTGTTCTTCAATCTAATCATGCTACTAATGGAATCAACATGGTCAATTCAGTTATAAAATCGCAAACTCTTGGTTCTAAATCCTCTGCCACACCTTTATCTGTTCTTCCATCAATAGGTTCCTTAATTGGTTCAACTGATTTAAGGAATAGGAATTGTTCCAAATCAAATGGTACACCTACTCAATTGACAATTTTTTATGGTGGTTCAATTTGTGTTTATGATGACATATCTCCTCAGAAGGCTCAGGCTATCATGTTACTGGCTGGAAATGGTCCTAAATTGCAGCCAGAAATCTCTGTTCCTTCTGAAAAGGATGGTTTCATTATAAGCCAATCCTATCCCTCACCATTGCCACATGCAAATTCTCAACCTAGGGGAGGTTCAAGTAGCAATAATGAACATTCAATAATAAGACCAATAGTACCTTCAATTGTCCCTATTAATCATTTGGAATCTTCTATTGTTGCTACTTCATTAAGATCTACACCAACAAAAGTGATTCAACCAGTAGGCTTGCCTCAAGCGCGTAAAGCTTCGTTGACTCGGTTTTTGGAGAAGCGAAAAGAAAGGGCAATGAGCACATCACCATACTATATGTGCAAGAAATCATCTGAATGCAACACTCTTGGATCAGATTCTACAAGTTTCTCTATTGATTTCTCAGCTTCAAGTCCTCAACTAGCCACCAACTTGCCCTTAAGAACAACATGTATGGAAGTTTAG 1152 0.3724 MEREFLGLNSKNIAWFNMKGDASNKPKDPVRSSGMQWSFSNKASTVPQFLSFKNNTHEDRSRNTTMDPLASSGYMTISTKDAFDSNQKSFLAVTQESLSIGKQVTNKLGMTIYPMQCSDHAQSICNQETRIFSVSNQSNQMCSVLQSNHATNGINMVNSVIKSQTLGSKSSATPLSVLPSIGSLIGSTDLRNRNCSKSNGTPTQLTIFYGGSICVYDDISPQKAQAIMLLAGNGPKLQPEISVPSEKDGFIISQSYPSPLPHANSQPRGGSSSNNEHSIIRPIVPSIVPINHLESSIVATSLRSTPTKVIQPVGLPQARKASLTRFLEKRKERAMSTSPYYMCKKSSECNTLGSDSTSFSIDFSASSPQLATNLPLRTTCMEV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01612 383 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 255 383 - -
Car08g01612 383 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 35 258 - -
Car08g01612 383 MobiDBLite consensus disorder prediction 255 276 - -
Car08g01612 383 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 35 258 IPR040390 -
Car08g01612 383 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 255 383 IPR040390 -
Car08g01612 383 Pfam tify domain 201 232 IPR010399 -
Car08g01612 383 Pfam Jas motif 316 341 IPR018467 -
Car08g01612 383 SMART tify_2 198 233 IPR010399 -
Car08g01612 383 ProSiteProfiles Tify domain profile. 198 233 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01612 Car-Chr8 25655225 25662812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01612 35 347 Tify Gene Family AT3G17860 39.394 1.04e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Car08g01612 tify 3.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01612 K13464 - gmx:100807288 440.654