Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01608 ATGTTTCACATTCCTTCATCTCCATTTCAAAACCAAAACAAATTACCAATGCAATTCACAATCCACTCACCACCATCCTCTTCCCCTTTCACCATTGCCTCCTTTACAAGATTCACTCCCACCCCTTCAAACCTCACTTTCAAAACCACAAGAAGAAACCGCTCCCGTTTTGCTTTAATTGTCAGAGCCAAAGGTGGAACAGATTTCTACTCAACTTTGAATGTTAGCAGCAATGCTTCTTTGCAAGAAATCAAAAGCTCATATCGGAAATTAGCTCGAAAGTACCATCCAGATATGAACAAAAACCCCGGAGCAGAGGAGAAGTTCAAGGAGATTAGTGCTGCATACGAGGTCCTATCAGATGATGAGAAAAGATCTTTATATGATCGCTTTGGTGAGTCAGGTCTACAAGGAGAAAATGGCGGACCAGCCAATGCCTCGGGGGTTGATCCTTCTGATTTATTCGATGCATTCTTTGGTCGTTCGGATGGACTATTTAGTGATGATGGGGGATTTGGCTTCAATTTGAGAAACGATAGAAACCGTAGCCATGATATTCGGTATGACCTTCAATTAAGCTTTGAAGAGTCGATTTTTGGAGGAAAGAGGGAGATTGAAGTTTCTTGTTATGAGACATGTGATAGTTGTGATGGTACAGGAGCTAAGTCAAAGAATAGCATTAAACAATGCACAAATTGTGGCGGCAAAGGAGGAGAGAAGAAAACCCAGAAAACACCCTTTGGAATGATGTCTCAGGTTTCTACGTGCTCTAAGTGTGGTGGTCTTGGCATGATAATCACGGACCGTTGTCGAAAGTGTGACGGCAGCGGTCACGTGCAAGCTAATCGAAAAATGGAAGTGGTCATTCCACCTGGCATCAATGATGGAGACACAATGCAAATTCGAGGAGAAGGGAATTTTGATAAAAGAAGGCGTCATATTGGGGATCTTTTTGTTGTCCTCCATGTCGATAAAAAGCAAGGAATTTGGAGAGAGGGTCTCAATTTATACTCAAAGATTAACATTGACTTCACTGAAGCAATACTAGGGTCTGTTAAAAAGGTAGaaactgttgaaggtttaagggacctccaaattccttctgggattcaacatggacattcagtgaagttaTCGCGTTTGGGAGTTCCAAACAGGAATAAACAATCTGTTCGAGGCGATCATTACTTTGTTGTAAATGTTCTTATTCCTAAAGATATCAGTGGCACGGAACGTGCTCTTGTTGAGCAGTTAGCTTCACTGAGAGCATCTACGAAAGTTCATTCATCGTCTTCTTCTGATGACTTCGGTATACCAAAAGGAAAATTCAATGATTTCATGAAGAGGGATACAAAAAGTGATGACTCGAGCCAGGGAACCGAAACTGCAAATTCTCTATGGGGATCAATCAAGAACTTCTTAAGGAAAGGAAAGTCTGAAGAAAGGTTTGCTTCAATTAGCCAAGTTTCGTCGTCGTCAGCACTGTTGCATAGATTTGGCCACCAAAAAAACAATTTAGTTCCACATTCCATTTTTGTTGTTCTCTTTATAACATGGATTTTAAAATCTATAGCAAAGTCTAAGCACTTGTTATTCCACAAAAGAACCTAA 1611 0.3904 MFHIPSSPFQNQNKLPMQFTIHSPPSSSPFTIASFTRFTPTPSNLTFKTTRRNRSRFALIVRAKGGTDFYSTLNVSSNASLQEIKSSYRKLARKYHPDMNKNPGAEEKFKEISAAYEVLSDDEKRSLYDRFGESGLQGENGGPANASGVDPSDLFDAFFGRSDGLFSDDGGFGFNLRNDRNRSHDIRYDLQLSFEESIFGGKREIEVSCYETCDSCDGTGAKSKNSIKQCTNCGGKGGEKKTQKTPFGMMSQVSTCSKCGGLGMIITDRCRKCDGSGHVQANRKMEVVIPPGINDGDTMQIRGEGNFDKRRRHIGDLFVVLHVDKKQGIWREGLNLYSKINIDFTEAILGSVKKVETVEGLRDLQIPSGIQHGHSVKLSRLGVPNRNKQSVRGDHYFVVNVLIPKDISGTERALVEQLASLRASTKVHSSSSSDDFGIPKGKFNDFMKRDTKSDDSSQGTETANSLWGSIKNFLRKGKSEERFASISQVSSSSALLHRFGHQKNNLVPHSIFVVLFITWILKSIAKSKHLLFHKRT 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01608 536 Gene3D - 184 319 - -
Car08g01608 536 CDD DnaJ 68 121 IPR001623 -
Car08g01608 536 SMART dnaj_3 67 124 IPR001623 -
Car08g01608 536 CDD DnaJ_C 185 407 - -
Car08g01608 536 CDD DnaJ_zf 213 277 IPR001305 GO:0031072|GO:0051082
Car08g01608 536 SUPERFAMILY HSP40/DnaJ peptide-binding domain 331 414 IPR008971 GO:0006457|GO:0051082
Car08g01608 536 SUPERFAMILY Chaperone J-domain 66 174 IPR036869 -
Car08g01608 536 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Car08g01608 536 PRINTS DnaJ domain signature 70 88 IPR001623 -
Car08g01608 536 PRINTS DnaJ domain signature 88 103 IPR001623 -
Car08g01608 536 PRINTS DnaJ domain signature 104 124 IPR001623 -
Car08g01608 536 PRINTS DnaJ domain signature 124 143 IPR001623 -
Car08g01608 536 ProSiteProfiles dnaJ domain profile. 68 132 IPR001623 -
Car08g01608 536 ProSiteProfiles Zinc finger CR-type profile. 200 282 IPR001305 GO:0031072|GO:0051082
Car08g01608 536 PANTHER EXPRESSED PROTEIN 74 430 - -
Car08g01608 536 Pfam DnaJ central domain 213 277 IPR001305 GO:0031072|GO:0051082
Car08g01608 536 Gene3D DnaJ domain 66 168 IPR036869 -
Car08g01608 536 SUPERFAMILY HSP40/DnaJ peptide-binding domain 185 323 IPR008971 GO:0006457|GO:0051082
Car08g01608 536 Hamap Chaperone protein DnaJ [dnaJ]. 65 473 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Car08g01608 536 Pfam DnaJ domain 68 129 IPR001623 -
Car08g01608 536 Gene3D - 327 435 - -
Car08g01608 536 Gene3D - 213 277 - -
Car08g01608 536 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 200 280 IPR036410 -
Car08g01608 536 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 74 430 - -
Car08g01608 536 Pfam DnaJ C terminal domain 186 404 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01608 Car-Chr8 25599687 25608234 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01608 70 129 C2H2 Transcription Factor Family AT1G74250 45.455 1.83e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01608 K03686 - gmx:100782135 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01608 08 25599687 25608234 Car08g01608 08 25599687 25608234 ECH