Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01602 ATGAGCTTGCAACAACGTAGAGAAAGGAGGGAAGGGTCGAGGTTCCCGTCACAACGTGCTCCTCGTCAGGAATGGGTTCCGAAAGGAGCTGGAGCATCCAATACGGcctccaccacagccaccaccaccacTGTTGTCCAGGCATCAGGTTCAAACTCTCATCAGAAGAATGCTAAGGATAATGCCGATGCGGGTTGCTCTTCCAATCAAGGGGTTGTTGTTGCTCCACCTTTTGCTCGGCATAGAAGTAATCATGTTGCTCATAGGGTGGAAAAGGAAAGGGATAATGGGAGGAACGGAAATATGGTAGGAAGGGGATCGAGGGACTCTAGTTTGCCTCAATTGGTGCAGGAGATTCAGGAGAAACTCATGAAAGGTGCTGTGGAGTGCATGATTTGCTATGATATGGTTCGGAGGTCAGCGCCCGTTTGGTCTTGCTCCAGCTGTTACTCTATCTTTCACCTGAATTGTATCAAGAAGTGGGCTCGTGCGCCCACCTCGGTTGATTTATCAGCAGAGAAGAATCTAGGGTTTAATTGGCGGTGTCCTGGTTGTCAGTTCGTGCAACATACGTCTTCAAAGGATATTAAGTATGTTTGCTTTTGTGGGAAGAGGGTAGACCCTCCATCTGATTTGTATCTGACACCGCATTCGTGTGGTGAACCGTGCGGGAAGCCTCTTGAGAGGGAGGTGTTGGTTACCGGAGGGAGAAAGGACGATCTTTGCCCTCATGCTTGTGTCTTGCAATGCCATCCGGGTCCATGTCCTCCTTGTAAAGCATTTGCTCCTCCTCGTTTGTGCCCTTGTGGGAAGAAAAAGATTGCCACCCGATGCTCCGATCGACAGTCTGATCTTACCTGTGGTCAGCAGTGTGATAGGCTTCTTGAATGTGGACGTCATCGCTGTGAACAAGCTTGCCATGTGGGTCCTTGCGATCCTTGTCAGGTGCTAATCAATGCCTCTTGCTTTTGCTGTAAAATGACACAAGTTATATTTTGTGGGGAGATGGCTGTGAAAGGCGAATTAAAAGAAGAAAGTGGGCTTTTTTCTTGCGGTTCCAAGTGTGGGAAGGAACTCGGTTGTGGTAATCATATCTGCAGTGAGGTTTGTCATCCAGGCAGCTGCGGCGAATGTGAATTTTTACCAAGTCGGGTTAAGACATGCTGTTGTGGAAAAACAAGGTTGGAGGAGGAACGACATAGCTGTATGGATCCAATACCTACTTGTTCACAAGTATGTGGCAAGCTCCTTCATTGCGGAATACATGCGTGTAAAGACCCATGCCATGTTGGGGAATGTCCACCATGTAAGGTCCTAATTTCACAGAAATGCCGTTGCAGCTCGACCTCCCGAACTGTGGAATGCTACAAAACATTAACGGAGAATCAGAAATTTACTTGTGAAAAGCCTTGTGGGCAAAAAAAGAATTGCGGAAGGCATCGATGTAGTGAAAAGTGTTGCCCATTGTCTGGTCCAAATAATGACGTGACTATTGCGGATTGGGATCCTCACTTTTGTTCCATGCTATGTGGAAAGAAGCTAAGATGCGGCCAGCATGTGTGTGAAACGTTGTGTCACAGTGGTCATTGTCCACCTTGTCTTGAAACAATTTTCACTGATTTGACATGTGCTTGTGGTAGAACTTCGATTCCTCCTCCGCTACCTTGCGGTACAATGCCTCCCTCATGTCAGCTTCCATGTTCGGTTCCTCAGCCGTGTGGCCATTCAGGCTCTCATAGTTGTCATTTTGGAGATTGCCCTCCTTGTTCGGTGCCCGTGTCGAAAGAATGTATTGGCGGGCACGTCGTTCTTAGGAACATACCTTGTGGCTCGAAGTATATTCGATGCAATAATCCTTGTGGAAGGACCAGACAATGTGGTTTACATGCATGCGGTAGAACATGTCACGCCCCACCGTGTGATATTCTACCTGGTTTTGTGAAGGATTTCCGAGCGACTTGTGGGCAGACATGCGGTGCTCCAAGGCGAAGCTGCCGGCATATGTGTATGGCTCAATGTCATCCTTCGTGTTCTTGCCCAGATGTAAGATGTGAATTCCCTGTTACAATTACATGTTCTTGTGGTCGCATATCCGCAAATGTTCCTTGTGATGCTGGTGGTAGCAATAGTAATTATAATGCTGATGCTATATATGAAGCTTCCATTATTCAAAAGTTGCCGGTGCCACTTCAACCGGTTGATGCAAATGGCCAAAAAGTTCCACTTGGACAAAGAAAGCTGATGTGTGACGATGAATGTGCTAAGTTGGAGCGTAAAAGGGTTCTTGCCGATGCTTTCGACATCACTCCAAGTCTCGATGCTCTTCATTTTGGCGAGAATTCTTCTTTTGAATTGCTTTCTGATACGTTTAGACGTGACCCGAAGTGGGTTTTGGCCGTCGAGGAGAGATGCAAAATATTAGTCCTTGGGAAGAACAAAGGAGCTACACATAGTTTAAAAGTCCATGTCTTTTGTCCTATGATAAAGGATAAAAGAGATGCAGTGAGATTGATTGCTGAAAGATGGAAGCTTTCGGTGGTTTCTGCTGGTTGGGAGCCAAAGAGATTCATTGTAATCTCTGCCACCCAAAAATCTAAGGCACCAGCTCGTGTGCTCGGTGTTAAGGGTACCACAACTATAAACGCACCCCTTCCTACTGCATTCGATCCGTTGGTCGATATGGACCCTCGACTCGTCGTCTCATTTCCAGACTTGCCAAGGGATGCTGATATTAGCGCCTTGGTGTTGAGATTCGGTGGCGAATGCGAGCTTGTTTGGTTGAACGACAAGAATGCTTTGGCTGTTTTTCACGATCCAGCACGAGCTGCAACTGCGATGAGGAGATTGGATCATGGAACAGTTTATCAGGGTGCTGTTTCATTTGTCCAGAATGTTGGCACATCAGCGACATCTTCGGTTACCAATGCCTGGGGAGGAGGAGTCGGAGCAACAAAAGAGAGCGGAGGACTGTCAACACTGAAAAACAATCCATGGAAAAAGGCGGTGGTTCTCGACCCGGGTTGGAAAGAAGATTGTTGGGGCGATGAACAATGGGCTACTCCCGGTGGTTCTGCGAATATCCAACCATCTGTTTTGAAGAAAGAAACGCCGATACCCGCTTCATTGAATCCTTGGAATATTTTAAACCAAGAATCGAGTTCCACTTCATCTACAACTGTCATCAAAAGTGAAGCTTCCTGGAAAGATGTTAAAAGCAATGCGGTCTCGACTAGCGCGGAGCCTTGTGCAGGTGGCTCAAATGGAGGAAACATGGATGCAACAGAAGAAGCTTCTGAAGTAGCTGAAGATTGGGAGAAGGCTTTTGAATGA 3330 0.4661 MSLQQRRERREGSRFPSQRAPRQEWVPKGAGASNTASTTATTTTVVQASGSNSHQKNAKDNADAGCSSNQGVVVAPPFARHRSNHVAHRVEKERDNGRNGNMVGRGSRDSSLPQLVQEIQEKLMKGAVECMICYDMVRRSAPVWSCSSCYSIFHLNCIKKWARAPTSVDLSAEKNLGFNWRCPGCQFVQHTSSKDIKYVCFCGKRVDPPSDLYLTPHSCGEPCGKPLEREVLVTGGRKDDLCPHACVLQCHPGPCPPCKAFAPPRLCPCGKKKIATRCSDRQSDLTCGQQCDRLLECGRHRCEQACHVGPCDPCQVLINASCFCCKMTQVIFCGEMAVKGELKEESGLFSCGSKCGKELGCGNHICSEVCHPGSCGECEFLPSRVKTCCCGKTRLEEERHSCMDPIPTCSQVCGKLLHCGIHACKDPCHVGECPPCKVLISQKCRCSSTSRTVECYKTLTENQKFTCEKPCGQKKNCGRHRCSEKCCPLSGPNNDVTIADWDPHFCSMLCGKKLRCGQHVCETLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTMPPSCQLPCSVPQPCGHSGSHSCHFGDCPPCSVPVSKECIGGHVVLRNIPCGSKYIRCNNPCGRTRQCGLHACGRTCHAPPCDILPGFVKDFRATCGQTCGAPRRSCRHMCMAQCHPSCSCPDVRCEFPVTITCSCGRISANVPCDAGGSNSNYNADAIYEASIIQKLPVPLQPVDANGQKVPLGQRKLMCDDECAKLERKRVLADAFDITPSLDALHFGENSSFELLSDTFRRDPKWVLAVEERCKILVLGKNKGATHSLKVHVFCPMIKDKRDAVRLIAERWKLSVVSAGWEPKRFIVISATQKSKAPARVLGVKGTTTINAPLPTAFDPLVDMDPRLVVSFPDLPRDADISALVLRFGGECELVWLNDKNALAVFHDPARAATAMRRLDHGTVYQGAVSFVQNVGTSATSSVTNAWGGGVGATKESGGLSTLKNNPWKKAVVLDPGWKEDCWGDEQWATPGGSANIQPSVLKKETPIPASLNPWNILNQESSSTSSTTVIKSEASWKDVKSNAVSTSAEPCAGGSNGGNMDATEEASEVAEDWEKAFE 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01602 1109 CDD NF-X1-zinc-finger 287 335 - -
Car08g01602 1109 ProSiteProfiles Zinc finger PHD-type profile. 127 188 IPR019787 -
Car08g01602 1109 CDD NF-X1-zinc-finger 351 396 - -
Car08g01602 1109 Pfam NF-X1 type zinc finger 516 533 IPR000967 GO:0005634|GO:0008270
Car08g01602 1109 Pfam NF-X1 type zinc finger 419 437 IPR000967 GO:0005634|GO:0008270
Car08g01602 1109 Pfam NF-X1 type zinc finger 626 641 IPR000967 GO:0005634|GO:0008270
Car08g01602 1109 Pfam NF-X1 type zinc finger 477 488 IPR000967 GO:0005634|GO:0008270
Car08g01602 1109 Pfam NF-X1 type zinc finger 244 259 IPR000967 GO:0005634|GO:0008270
Car08g01602 1109 Pfam NF-X1 type zinc finger 361 378 IPR000967 GO:0005634|GO:0008270
Car08g01602 1109 Pfam NF-X1 type zinc finger 573 590 IPR000967 GO:0005634|GO:0008270
Car08g01602 1109 Pfam NF-X1 type zinc finger 297 315 IPR000967 GO:0005634|GO:0008270
Car08g01602 1109 CDD RING-CH-C4HC3_NFX1 129 186 - -
Car08g01602 1109 MobiDBLite consensus disorder prediction 1 110 - -
Car08g01602 1109 MobiDBLite consensus disorder prediction 84 99 - -
Car08g01602 1109 MobiDBLite consensus disorder prediction 30 68 - -
Car08g01602 1109 CDD NF-X1-zinc-finger 563 611 - -
Car08g01602 1109 MobiDBLite consensus disorder prediction 1059 1084 - -
Car08g01602 1109 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 106 1093 - -
Car08g01602 1109 CDD NF-X1-zinc-finger 506 558 - -
Car08g01602 1109 ProSiteProfiles Zinc finger RING-type profile. 130 186 IPR001841 -
Car08g01602 1109 SUPERFAMILY RING/U-box 120 190 - -
Car08g01602 1109 MobiDBLite consensus disorder prediction 1 17 - -
Car08g01602 1109 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 106 1093 IPR034078 GO:0003700
Car08g01602 1109 CDD NF-X1-zinc-finger 409 457 - -
Car08g01602 1109 SMART znfxneu3 477 508 IPR000967 GO:0005634|GO:0008270
Car08g01602 1109 SMART znfxneu3 573 591 IPR000967 GO:0005634|GO:0008270
Car08g01602 1109 SMART znfxneu3 242 260 IPR000967 GO:0005634|GO:0008270
Car08g01602 1109 SMART znfxneu3 665 686 IPR000967 GO:0005634|GO:0008270
Car08g01602 1109 SMART znfxneu3 361 380 IPR000967 GO:0005634|GO:0008270
Car08g01602 1109 SMART znfxneu3 419 438 IPR000967 GO:0005634|GO:0008270
Car08g01602 1109 SMART znfxneu3 297 316 IPR000967 GO:0005634|GO:0008270
Car08g01602 1109 SMART znfxneu3 516 535 IPR000967 GO:0005634|GO:0008270
Car08g01602 1109 SMART znfxneu3 626 656 IPR000967 GO:0005634|GO:0008270
Car08g01602 1109 MobiDBLite consensus disorder prediction 1059 1109 - -
Car08g01602 1109 CDD NF-X1-zinc-finger 219 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01602 Car-Chr8 25519741 25523897 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Car08g01602 zf-NF-X1 1.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01602 K12236 - gmx:100789059 1704.88