Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01596 ATGGATTTATGTTGGGgaagaagaaggaagaacaagaaaagTGGAAAACCCAACATGGAAATTGTGATTCCAAATCAGTTTAGGTGTCCAATTACTCTTGATTTGATGAAAGATCCAGTTACATTGTCAACAGGAATCACCTATGATAGAGAAAGTGTTGAAAGATGGTTCAATGAAGGAAACTATACTTGTCCTGTCACAAATCAAGTTGTGAGAAATTTTGACATGATTCCAAATCATTCTCTTACTAGAATTATTCAAGATTGGTGTGTTGAAAATAGAAAAAATGGTGTAGAGAGGATTCCAACGCCGAGAACACCGATTAGTCCTATCGATGTGTTGGAGCTTCTTTTTCGGGTTAAGGATTCGTCGAAAAATTTGGATCAATATGGTTGTCTTGAATTGGTTAAAAAAATAGAAAAATGGGGTGGTGAGAGTGAGAGGAACAAAAGATGTATAGTTGAGAATGGAGCAACAAGTGCATTGGCTTTAGCTTTTGATGCTTTTGCTAATGATTCTATTGAGAAAAATGTTGTTGTTCTTGAAGCGATTTTGTCAGCACTTAATTGGATGTTTCCACTTCAAGTAGAAGCTCAAAAAAGTTTAGGATCTAAAGCTTCTTTACATTGCATGATTTGGTTTTTAAAGCATCAAGATCTTAAAGGGAAAGAAAAATCAATTGTTGCATTGAAAGAGCTTCTTTCATTTGGTGATGTTAATCATGTGGAAGCACTTTTGGAGATTGAAGGTGTTAATGAGCTTTTGGTTGAGTTTATTAACAAGAGAATTAGTCCAACAATTACAAAAGCTTCATTGAGGGTAATTTGGTACTTAGTTTCATCAAAAAGTGATTCTTGCAATGAAAAAATGAAATTTTTATTTGTTGAATTGGGTTTGGTTTCTTCAATTTTGAACATTCTTATTGACTCAGAAAAAAACATTTTTGAAAAGGGTTTGGTTATTTTGGATTCACTATGCAACATTGAGAAAGGAAGAGAAAAAGCTTATGAAAATGACTTAACAATTCCTTTGTTGGTTAAGAAAATTTTGAGAGTTTCACCTTTGACTACAGAATATTCTGTTTCTTCTATTTGGAAACTATGCAAATTTGGAGAAAAAGATTATGAAGGAAAAGCTTTGATAGAAGCACTTCAAGTTGGTGCTTTTCAAAAGCTCTTATTGGTATTGCAAGTTGGTTGTAGTGATGAGACCAAAGAAAAAGCAACTGAACTTCTCAAATTGATGAATCCTTATACAGATTATTTGGAATGCATTGATTCAGATTTCAAGAATCTTGAGAGATCATATTAA 1311 0.3227 MDLCWGRRRKNKKSGKPNMEIVIPNQFRCPITLDLMKDPVTLSTGITYDRESVERWFNEGNYTCPVTNQVVRNFDMIPNHSLTRIIQDWCVENRKNGVERIPTPRTPISPIDVLELLFRVKDSSKNLDQYGCLELVKKIEKWGGESERNKRCIVENGATSALALAFDAFANDSIEKNVVVLEAILSALNWMFPLQVEAQKSLGSKASLHCMIWFLKHQDLKGKEKSIVALKELLSFGDVNHVEALLEIEGVNELLVEFINKRISPTITKASLRVIWYLVSSKSDSCNEKMKFLFVELGLVSSILNILIDSEKNIFEKGLVILDSLCNIEKGREKAYENDLTIPLLVKKILRVSPLTTEYSVSSIWKLCKFGEKDYEGKALIEALQVGAFQKLLLVLQVGCSDETKEKATELLKLMNPYTDYLECIDSDFKNLERSY 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01596 436 SMART Ubox_2 26 89 IPR003613 GO:0004842|GO:0016567
Car08g01596 436 CDD RING-Ubox_PUB 27 69 IPR045210 -
Car08g01596 436 PANTHER WDSAM1 PROTEIN 13 436 IPR045185 GO:0061630
Car08g01596 436 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 436 - -
Car08g01596 436 Gene3D - 112 427 IPR011989 -
Car08g01596 436 ProSiteProfiles U-box domain profile. 22 96 IPR003613 GO:0004842|GO:0016567
Car08g01596 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 101 IPR013083 -
Car08g01596 436 Pfam U-box domain 23 95 IPR003613 GO:0004842|GO:0016567
Car08g01596 436 SUPERFAMILY ARM repeat 133 415 IPR016024 -
Car08g01596 436 SUPERFAMILY RING/U-box 18 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01596 Car-Chr8 25443775 25445635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01596 1 436 U-box Gene Family AT5G37490 42.953 2.65e-113 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01596 - - gmx:100794340 663.299