Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01583 ATGTTAGCTAATACCTTATCTCCATCTTCACTTCCATCTTCTGACCCTTTTTCTTGCACTGAAAATGGCACTTCTTCCACCAAAAAAAGAAAAAGAAGACCGGCCGGAACACCAGATCCAGATGCAGAAGTGGTGTCTCTCTCACCAAAAACATTATTGGAATCAGATCGTTATGTATGTGAGATCTGCAACCAAGGATTCCAAAGGGACCAGAATTTACAGATGCATAGGAGAAGGCATAAGGTACCATGGAAATTATTGAAGAGGGAGACACCAGTTGTTAGGAAAAGAGTTTTTGTTTGTCCTGAACCAACTTGTTTGCACCATGATCCTTGTCATGCTTTAGGTGATCTTGTTGGTATTAAGAAACATTTTAGAAGGAAACATAGTAATCACAAACAATGGGTTTGTGAAAGATGTTCTAAAGGTTATGCAGTGCAATCTGATTATAAAGCTCATCTTAAAACTTGTGGTACTAGAGGTCATTCTTGTGATTGCGGTCGAGTTTTCTCGAGGGTTGAGAGTTTTATTGAGCATCAAGATGCTTGCAACATGGGAAGAATTCTTCATTCAGAATCTCAACCACTTCAAACACCAACTGCATGCTTATCAAGAACAGCTTCAAGTCCAAGTCCATCAAGTGAAACAAATTTCATAACATGTCCTTGGCAAACTAGGCTTCAAATAATTCCAAAAGAACCAACAATTTTCATGAACCCTATTTCTCCTATTACTCCAACTACTACTATTTCTACTACACCTTCTCAAATATTTTCAAAAAATAATAAAGTTGTACTTCATCCAAATTTGGAACTTCAACTCTCAACTACATCATCAAAAAGCATTGATTTAGGAGCATCATCATCATCACCAAAGAGACATGATCATATGCAAAAGGTGATTAACCAATCAACTCAATTGCATCTTTCAATTGGGTCAACAAATATGAGTCAAAAAAATAATATTGAATCAAACAATATTATAAGAAACTCAAACTCATCACCAAAAGAAAGTAGCAATAGTAGTGAGAAAGTTTCAACAACAACAACAAGCATGGCTTTGTTAAGGGTTCAAGAACAAGCAAGAGAACAACTAAGGATAGCTATTGTTGAAAAAGCTTATGCTGAAGAAGCTAGAAAACAAGCAAAGAAACAAATTGAAATGGCTGAACAAGAGTTCAACAATGCAAAGAGGATAAGACAACAAGCACAAGGTGAACTTGATAAAGCTTATGGATTGAAAAACCATGCAACTAAACAAATCAATTCAACTATGCTTCAAATAACTTGTCAAGCTTGCAAACAACAATTTCAACAAGatgataataataataataataaCTCTTTGGTTTTGAGTTATGTTTCTTCAGCTATAACAACTGAAGGTGGTGAAGTAGAAAATGATGATGGAAAAGGCAAAACAACTACCTAA 1431 0.3515 MLANTLSPSSLPSSDPFSCTENGTSSTKKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRILHSESQPLQTPTACLSRTASSPSPSSETNFITCPWQTRLQIIPKEPTIFMNPISPITPTTTISTTPSQIFSKNNKVVLHPNLELQLSTTSSKSIDLGASSSSPKRHDHMQKVINQSTQLHLSIGSTNMSQKNNIESNNIIRNSNSSPKESSNSSEKVSTTTTSMALLRVQEQAREQLRIAIVEKAYAEEARKQAKKQIEMAEQEFNNAKRIRQQAQGELDKAYGLKNHATKQINSTMLQITCQACKQQFQQDDNNNNNNSLVLSYVSSAITTEGGEVENDDGKGKTTT 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01583 476 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Car08g01583 476 PANTHER OS03G0310200 PROTEIN 1 462 IPR039288 GO:0009630
Car08g01583 476 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 195 IPR013087 -
Car08g01583 476 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Car08g01583 476 SMART c2h2final6 58 80 IPR013087 -
Car08g01583 476 SMART c2h2final6 135 162 IPR013087 -
Car08g01583 476 SMART c2h2final6 99 129 IPR013087 -
Car08g01583 476 Coils Coil 372 406 - -
Car08g01583 476 Gene3D Classic Zinc Finger 46 131 - -
Car08g01583 476 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 462 - -
Car08g01583 476 MobiDBLite consensus disorder prediction 1 45 - -
Car08g01583 476 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Car08g01583 476 MobiDBLite consensus disorder prediction 1 24 - -
Car08g01583 476 MobiDBLite consensus disorder prediction 325 349 - -
Car08g01583 476 SUPERFAMILY beta-beta-alpha zinc fingers 55 81 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01583 Car-Chr8 25193915 25197589 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01583 21 467 C2H2 Transcription Factor Family AT2G01940 49.134 1.64e-123 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car08g01583 zf-C2H2 0.0045 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01583 K25871 - gmx:100785333 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01583 08 25193915 25197589 Car08g01583 08 25193915 25197589 ECH