Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01581 ATGGAAATGTTATCATCATCTTCATCACATTCACAAAACTATATCTACAGAGAATGTTTAAGAAACCATGCAGCAAGTCTCGGAAGCTACGCAACCGACGGTTGCGGCGAATTCACCGTCGACAACACGTCACCAACCGCCGTTAACAGTCTCCAATGTGCAGCCTGCGGCTGTCACCGGAACTTTCACCGGAAAATAACCGCATCGTATACAGCCGCAGCAATGTCGGATCAGGTGATGGAATATTCAGGCGGCGGAGGTAGCGGCGGAGATGGGAGGAGGAAAAGGTACCGGTCGAAATTCACGGCGGATCAGAAAGAGAAGATGTTGGAATTTGCTGAAAAATTAGGGTGGAAATTGCAGAGGAAAGAACTTGATGAAGAAATTGAAAGGTTTTGTGAAAGTGTTGGTGTGAGTAGACAAGTTTTCAAAGTTTGGATGCATAATCATAAGAATTCTTCTTTCTCTAATTCTTCTCCTTCTACTGGTAATGCTAATTCCTCTCTTACTCAATAA 516 0.4399 MEMLSSSSSHSQNYIYRECLRNHAASLGSYATDGCGEFTVDNTSPTAVNSLQCAACGCHRNFHRKITASYTAAAMSDQVMEYSGGGGSGGDGRRKRYRSKFTADQKEKMLEFAEKLGWKLQRKELDEEIERFCESVGVSRQVFKVWMHNHKNSSFSNSSPSTGNANSSLTQ 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01581 171 Gene3D - 80 158 - -
Car08g01581 171 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 16 65 IPR006456 -
Car08g01581 171 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 11 160 - -
Car08g01581 171 Pfam ZF-HD protein dimerisation region 14 66 IPR006456 -
Car08g01581 171 SUPERFAMILY Homeodomain-like 81 152 IPR009057 -
Car08g01581 171 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 94 152 IPR006455 -
Car08g01581 171 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 16 66 IPR006456 -
Car08g01581 171 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 11 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01581 Car-Chr8 25162356 25163163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01581 14 160 ZF-HD Transcription Factor Family AT5G65410 39.894 4.82e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Car08g01581 ZF-HD_dimer 1.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01581 - - csv:101204350 209.534