Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01571 ATGTGTAGTAGAGGCCATTGGAGACCATCTGAGGATGAGAAGCTTAAGGAGTTGGTGGAAAGCTATGGACCTCATAATTGGAACGCCATAGCTGAAAAACTTCGAGGAAGATCAGGGAAAAGTTGTAGGTTGAGATGGTTCAATCAATTGGATCCAAGAATAAATAGAAATCCTTTCAATGAGGAAGAAGAAGAGAGACTTATAGCTTCTCATCAAATTCATGGAAATAGATGGGCTGTAATTGCAAGACATTTTCCAGGAAGAACTGATAATGCTGTAAAAAATCATTGGCATGTAATGATGGCAAGAATTCGTAGAGAAAGGTATAAAGTCTATGCAAAAGGTCCTCTTGATCATCACATAATTTTCTCTCAAAATGATCATCAAACAACTAACTATGAGACATCAAATCTTCATTCTTTTGTTGACAAGTATCATCAAAAGCATAATCATCAACTTTTGCAATTTCACAAGTTTCACTTTCAAGGTCCAAGTTCTTGTTCCACAAGGCTTCAAGATAAAAGTCAATCAGTTGAGTTCTATGATTTTCTTCAAGTAAACACTGATTCCAATAAAAGTGAAGTTACCGATAATGCTAGAAAAGATGATGAGGAAGTGAATCAAGATATTTTGGGACATCAAAACAAGGAAAACAATGTTCCATTCATTGATTTTTTGTCTACTGGAAGCTGCTAA 696 0.3534 MCSRGHWRPSEDEKLKELVESYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRNPFNEEEEERLIASHQIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIRRERYKVYAKGPLDHHIIFSQNDHQTTNYETSNLHSFVDKYHQKHNHQLLQFHKFHFQGPSSCSTRLQDKSQSVEFYDFLQVNTDSNKSEVTDNARKDDEEVNQDILGHQNKENNVPFIDFLSTGSC 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01571 231 Pfam Myb-like DNA-binding domain 56 99 IPR001005 -
Car08g01571 231 Pfam Myb-like DNA-binding domain 4 50 IPR001005 -
Car08g01571 231 Gene3D - 4 55 - -
Car08g01571 231 Gene3D - 57 152 - -
Car08g01571 231 PANTHER MYB PROTEIN-RELATED 1 230 - -
Car08g01571 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Car08g01571 231 CDD SANT 7 48 IPR001005 -
Car08g01571 231 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Car08g01571 231 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Car08g01571 231 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Car08g01571 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Car08g01571 231 CDD SANT 58 101 IPR001005 -
Car08g01571 231 SMART sant 3 52 IPR001005 -
Car08g01571 231 SMART sant 55 103 IPR001005 -
Car08g01571 231 PANTHER MYB-RELATED PROTEIN A-LIKE 1 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01571 Car-Chr8 24923106 24927190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01571 1 229 MYB Transcription Factor Family AT1G17950 56.557 4.68e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car08g01571 Myb_DNA-binding 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01571 K09422 - gmx:100811746 332.028