Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01565 ATGGCTGAGTTTGAGAAAGAGGAAATGCAAATGATATCAGATACTAATCCAAAACCATCAAATGAACCTGATGATTCTAAATCCAAGAATTTTCTACCTAGGATGCGAAGCGTATCGATTTCTATTCCGATGATTCCTATAGATCCATATGAAAGAGATACTAATCTTAAGGGACACACTGGTCCCTTAAGGAGTCAAAGAAAAACTCCATTTATTCCAATGAGTGGTCCATTATATGTTACTAATAGAGGCGAAAATCTTTTCGGGCAGAATATAATGGCGCCAAGGAGCGGCACGATCGAAAATAAGACAGAAAAGTTTCCTCTATGTGGCATGAATGAAGATGACTTGCAGAACAAGTATGCTGCTAAAAATGAACATTTGGTAAGGTCTGGTCAATTGGGAATGTGTAATGATCCTTATTGTACAACTTGTCCAACTTACTTCAAGGCTACTCAACAAAGGGATTCAAAAACTTATGGTTTATTCAATCCTAAGAAGTTTCAGAATGCTCTCTATGGAGATGCCAAGGATTGGGCTAGAAGAATTTTTGCTTTTTTGATTCCACATGTACCTAGAGTTATGAACCCTCATAATAAACTTGTACAACAATGGAATAAATTTTTTGCAATTTGTTGCTTGGTGGCAATTTTTGTGGATCCATTATTTTTCTTCCTGCTTTCTGTGAATAAGATAAATAAATGTATTGTTATTAACACAACTATGACAACAGTGCTTGTTTTACTCAGAAGTATGAATGATTTCATACATTTCCTAAATATTATTCTTCAGTTTAGGTTGGCTTATGTGGCACCTGAGTCTAGGGTGGTTGGTGCTGGAGAGTTAGTTGACAATCCTAAGAAAATAGCTCTTCATTATCTTCAAACATATTTTCTTTTTGACTTGTTTGTTGTACTTCCACTTCCTCAAATAATGATATTGTTTGTTCTACCAACACACTTAGGATCATCAAGAGCAAATTATGCAAAGAATCTTCTGCGCGCCGTCGTCCTTGCGCAGGCAATTCCTAGATTATGTAGATTTATTCCAATGTTAATTTCTCCAACTAGATTCATATTTGAGTCAGCTTGGGCAAGTTTCTTTATAAATCTTTCTACCTTTATGCTATCTGGCCATGTTGTTGGTTCATGGTGGTACCTCTTTGGTTTACAGAGGGTTAATCAATGTCTACGAAATGCATGCAAGACAACAACATATTTTGTTGAATGTTCAAAATTCATGGATTGTGGACATGGAGGCAATGAGGAAAATCAAAATGAATCAAATTGGATTCATTGGAAGAAAAATAGCAATGCAAGTGCTTGTTTTACAGAAGATGGTTTTGAATATGGAATTTATCTTAAAGCTGTCAACCTTACTACAAAGCATAATGTGTTCACAAGATATGTATATTCATCATATTGGGGATTTCAGCAAATTAGTACTCTTGCTGGAAATTTGTCCCCAAGCTATTTTGTATGGGAAGTCCTTTTTACTATGGGCATAATTGGATTAGGACTCTTGCTTTTTGCTCTTCTCATTGGGAACATACAAAACTTTCTTCAGGCTCTTGGAAGAAGGAGGCTAGAAATGTCACTTAGACAACGTGATGTTGAGCAATGGATGAGCCATAGGCGCTTAGAAGAAAATCTAAGAAGGAGAGTGCGACAAGCGGAACGTTATAATTGGGCTGCAACTCGAGGGGTGAATGAAGAAATACTGATGGAGAATTTGCCAGAAGATCTTCAAAGGGATATCAGACGCCATCTCTTTAATTTTGTTAAGAAAGGTCGAATTTTTTCCTTGATGGATGATCCTATCTTGGATGCCATTTGTGATAGACTTAGACAAAAAATATATATCAAAGGAAGCAAAATTTTATATGATGGTGGGTTGGTAGAGAAAGTTGTTTTTATTGTGAGAGGAAGATTGGAGAGTATTGGTGAAGATGGAAATAGAGTTCCTCTATCTGAAGGTAGTGTTTGCGGTGAAGAACTTCTCACATGGTGTCTTGAGCATCCTTTAGGAAACAAAGTTTGTGGAAAAACAAGGATTCCAAGACAAAGGTTGGTTAGCAATAGGACAGTATTGTGCTTAACAAATGTGGAGGCATTTTCACTTAAAGCAACAGACCTTGAAGAAGTTACAACCCTTTTTGCAAGATTCTTGAGGAGGCCTGCTGTTCAAGGAGCCATAAGGTATGAATCACCTTATTGGAGATGCCTTGCAGCAACACGAATCCAGGTTGCATGGAGATACAGAAAAAAACGTCTTTGTCGAGCTTACACTTCACAATCAAATAATGAACCATCAAACTAA 2319 0.3683 MAEFEKEEMQMISDTNPKPSNEPDDSKSKNFLPRMRSVSISIPMIPIDPYERDTNLKGHTGPLRSQRKTPFIPMSGPLYVTNRGENLFGQNIMAPRSGTIENKTEKFPLCGMNEDDLQNKYAAKNEHLVRSGQLGMCNDPYCTTCPTYFKATQQRDSKTYGLFNPKKFQNALYGDAKDWARRIFAFLIPHVPRVMNPHNKLVQQWNKFFAICCLVAIFVDPLFFFLLSVNKINKCIVINTTMTTVLVLLRSMNDFIHFLNIILQFRLAYVAPESRVVGAGELVDNPKKIALHYLQTYFLFDLFVVLPLPQIMILFVLPTHLGSSRANYAKNLLRAVVLAQAIPRLCRFIPMLISPTRFIFESAWASFFINLSTFMLSGHVVGSWWYLFGLQRVNQCLRNACKTTTYFVECSKFMDCGHGGNEENQNESNWIHWKKNSNASACFTEDGFEYGIYLKAVNLTTKHNVFTRYVYSSYWGFQQISTLAGNLSPSYFVWEVLFTMGIIGLGLLLFALLIGNIQNFLQALGRRRLEMSLRQRDVEQWMSHRRLEENLRRRVRQAERYNWAATRGVNEEILMENLPEDLQRDIRRHLFNFVKKGRIFSLMDDPILDAICDRLRQKIYIKGSKILYDGGLVEKVVFIVRGRLESIGEDGNRVPLSEGSVCGEELLTWCLEHPLGNKVCGKTRIPRQRLVSNRTVLCLTNVEAFSLKATDLEEVTTLFARFLRRPAVQGAIRYESPYWRCLAATRIQVAWRYRKKRLCRAYTSQSNNEPSN 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01565 772 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 30 761 - -
Car08g01565 772 SMART cnmp_10 599 734 IPR000595 -
Car08g01565 772 SUPERFAMILY Voltage-gated potassium channels 197 527 - -
Car08g01565 772 MobiDBLite consensus disorder prediction 1 33 - -
Car08g01565 772 Gene3D Helix hairpin bin 527 591 - -
Car08g01565 772 Gene3D Jelly Rolls 598 721 IPR014710 -
Car08g01565 772 SUPERFAMILY cAMP-binding domain-like 527 722 IPR018490 -
Car08g01565 772 Gene3D - 207 524 - -
Car08g01565 772 CDD CAP_ED 599 725 IPR000595 -
Car08g01565 772 Pfam Ion transport protein 205 527 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Car08g01565 772 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 30 761 - -
Car08g01565 772 ProSiteProfiles cAMP/cGMP binding motif profile. 599 674 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01565 Car-Chr8 24856791 24865795 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01565 5 672 Ion Channels AT3G17700 60.386 0.0 788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01565 K05391 - gmx:100795955 1188.33