Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01563 ATGAATCATTTTGATAAAGATGAAGTGCCAATGCTATCAGAAATGCGTGCACAACCATCCGATGAACCTGCGAATTCTAACTTTCGAAGGATATCGAGGACACAAAGTGCTTCGATTTCTATTCCTATGGCTTCCTTGGATCCAAATGACAGACAACCTAATCTTGTCGGACATACCGGTCCGCTTCGTACCGCGAGGAAAACACCGTTTGCGCAGATGAGTGGTCCATTAAACGCCACTCCGGGAATGGGAAATCCTTTTCAGAATGGTATTGTAGTGGCAGGAAACAAAGTAGGGGAGAACAAGACAGAGAAGTTTAGTACATTTGATGACACAAATGAACATCATTGGAATATTGACAATGACAGAAAAAATGAACACTTATTGAGGTCTGGACAACTTGGAATGTGTAATGATCCTTATTGCACAACTTGTCCTACTTACTTCAAAGTTTCTCAGCAAATAAAACCAAGAGCTTCCACTATATTTGATCATAAGTTCCACAATTCTCTTTATGGAGATGCCAAAGGTTTTGGAAAAAAAATTTATTCTTTATGCTCTTCATGTATTCCTGGAGTGATGAACCCTCACACTAAAGTTGTACAACAATGGAACAAGTTTTTGGCTATATTTTGCTTGGTTGCAATTTTTGTTGATCCGTTATTTTTCTTCTTAATTTATGTGAGGGAGCGTGATAAATGCATTGTTATGAACTGGACAATGGCAACAACACTTGTTTTATTTAGAAGCATAACTGATTTTGTGTATTTCTTGAACATTCTTCTCCAGTTTAGGTTGGCTTATATTTCTCCTGAATCAATGGTTGTTGGTGCCGGAGATTTAGTTGACAGTCCCAAGAAAATTGCTCTTAATTACTTTAAGAGTTATTTTTTCTTCGACTTGTTTGTTGTATCGCCTCTTCCTCAGATAATGATATTGTTTATCCTACCAAATTCGTTGGGGTCATCAGGAGCAAATTATGCAAAGAATCTTCTACGTCTAGCGATCCTTGTACAGTATATTCCAAGATTATTCAGATTTTTGCCTCTGCTAATTGGCCAGTCTCCCACCGGATTCATATTCGAGTCAGCATGGGCAAATTTCATTATAAATCTTCTCATTTTTATGCTATCTGGCCATGTTGTTGGTTCATGCTGGTACCTCTTTGGTCTACAGAGGGTTAACCAATGTTTGCGAGATGCTTGCCATAATGCTAAACTACATAGATGCATGGAATTGATTGATTGTAAACTTAACGGGGATATTATATCTAATCTTTGGAGCGAAGATCTAGGCGCCAAGGCTTGTTTGAATACCTCAAGTAATGCTTTTTCTTATGGGATCTATGAAGGTGCTGTACCACTTACCATAGAAACTAAGGTTATCAACAAATATGTGTATGCATTGTTTTGGGGATTCCAGCAAATCAGTACTCTGGCTGGTAATCAAACACCAAGTTATTTTGTGTGGGAAGTTCTCTTTACAATGTCCATCATAGGATTGGGACTCTTGCTTTTTGCGCTTCTCATCGGAAACATACAGAACTTTCTTCAAGCTCTTGGACGGAGGAGACTAGAAATGCAACTTAGAGGCCGTGATGTCGAGCAATGGATGAGCCATCGTCGTTTACCAGAAGCTCTCAAAAGGAGAGTACGGCAGGCTGAACGGTATAATTGGGCTGCAACAAGAGGAGTTCCGGAAATAATGGTTCTGGAGAATTTGCCGGAAGATCTTCAGACGGACATTAGACGCCATCTCTTCAAATTTGTTGAAAATGTTCGAATTTTTTCCTTGATGGCCGAGGACGAGCCTATCTTAGATGCTATTCGTGAGCGACTAATACAAACGACATACATCAAAGGAAGTAAAATTTTGAGTCAGGGTGGTCTTGTACAGAAGATGGTGTTTGTTGTGCGTGGAAAATTGGAGAGCATCGGAGAAGATGGAATTCCGGTTCCCTTATCTGAAGGAGATGCTTGCGGCGAAGAACTTCTAAGATGGTATCTTGAACAATCTTCACAAAGCAAAGAAGGTAAGAAAGTAAAGCTTCATGGACAAGGGTTGACCAGTGATAGAACAGTAAAATGCTTAACAAATGTGGAAGCATTTTCACTCCGCGCTAAAGACATTGAAGAAGTCACAACTCTTTTCGCAAGATTCTTGCGGAGCCCTCGTGTTCAAGGAGTCATAAGGTATGAATCACCTTATTGGAAATCACTTGCAGCAAACAGAATTCAAGTTGCATGGAGATACAGGCAAAAGCGTCTAAATCGAGCTAATACAACACAAAATGATCAAAGATTGAATCAATAG 2313 0.3956 MNHFDKDEVPMLSEMRAQPSDEPANSNFRRISRTQSASISIPMASLDPNDRQPNLVGHTGPLRTARKTPFAQMSGPLNATPGMGNPFQNGIVVAGNKVGENKTEKFSTFDDTNEHHWNIDNDRKNEHLLRSGQLGMCNDPYCTTCPTYFKVSQQIKPRASTIFDHKFHNSLYGDAKGFGKKIYSLCSSCIPGVMNPHTKVVQQWNKFLAIFCLVAIFVDPLFFFLIYVRERDKCIVMNWTMATTLVLFRSITDFVYFLNILLQFRLAYISPESMVVGAGDLVDSPKKIALNYFKSYFFFDLFVVSPLPQIMILFILPNSLGSSGANYAKNLLRLAILVQYIPRLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLSGHVVGSCWYLFGLQRVNQCLRDACHNAKLHRCMELIDCKLNGDIISNLWSEDLGAKACLNTSSNAFSYGIYEGAVPLTIETKVINKYVYALFWGFQQISTLAGNQTPSYFVWEVLFTMSIIGLGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPEALKRRVRQAERYNWAATRGVPEIMVLENLPEDLQTDIRRHLFKFVENVRIFSLMAEDEPILDAIRERLIQTTYIKGSKILSQGGLVQKMVFVVRGKLESIGEDGIPVPLSEGDACGEELLRWYLEQSSQSKEGKKVKLHGQGLTSDRTVKCLTNVEAFSLRAKDIEEVTTLFARFLRSPRVQGVIRYESPYWKSLAANRIQVAWRYRQKRLNRANTTQNDQRLNQ 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01563 770 SUPERFAMILY Voltage-gated potassium channels 196 523 - -
Car08g01563 770 Pfam Ion transport protein 205 523 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Car08g01563 770 ProSiteProfiles cAMP/cGMP binding motif profile. 605 665 IPR000595 -
Car08g01563 770 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 4 762 - -
Car08g01563 770 SUPERFAMILY cAMP-binding domain-like 523 716 IPR018490 -
Car08g01563 770 Gene3D - 206 520 - -
Car08g01563 770 Gene3D Helix hairpin bin 522 582 - -
Car08g01563 770 MobiDBLite consensus disorder prediction 1 27 - -
Car08g01563 770 Gene3D Jelly Rolls 583 719 IPR014710 -
Car08g01563 770 CDD CAP_ED 595 713 IPR000595 -
Car08g01563 770 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01563 Car-Chr8 24831949 24838114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01563 2 673 Ion Channels AT3G17700 58.806 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01563 K05391 - ccaj:109789004 1173.69