Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01562 ATGGATTCTTATGAGAAAGAAACTAGTCTCAAAGTTAAGGAACATGTTGCTGCACTAAATGCTGCCCATGGAACTGGAAATCTTGTGCAACAAACTGTAGTTGTGATAGGAAACAAAGTTGAAAAGTGCAAGAAAGAAATTTTTTCTCCTTTAAACCATTGGAATAATACCCATGATAGAGAAAATGAACACTTAGGAAAATCTGGCCTACTTGGAATGTGTGATGACCCTTATTGCACTACTTGCCCTACTTACTTCAAGGCTTCTAAACAAAGAAGTCCAAAAGCTTTGAATGAATTTGATTCCAAGTTCCACAATGCTCTTTATGGGGATGCCAAGGGTTTTGGGAGAAAACTTTTGTCTTTTTGCTCTTCATGTGTTCCTGGAGTTATAAATCCTCACACTAAACTTGTCCAACAATGGAACAAATTTCTGGCCATTTTTTGCATGGTGGCAATTTTTGTAGATCCATTATTTTTATTCTTAATATATGTCCAGAAGGATTTTAATTGTATTGCTATCAACTGGACAATGACAGAAACACTTGTTTTACTTAGAAGCATGAATGATTTTGTATATTTCTTAAACATTCTTCTCCAGTTTAGGTTGGCCTATGTGTCACCAGAGTCAAGAGTGGTTGGTGCTGGAGATTTAGTTGATGATCCCAAGAAAATTTCTGTCCGTTACCTGCAAAGTTATTTTCTTGTTGACTTGTTTGTTGTATTGCCCCTTCCTCAAATAATGATACTATCTGTCTTACCAAGGCACTTGGGTTTATCAGGAGCAAATTATGCTAAGAATCTTCTACGTGCAGTGATCCTTGTGCAGTACATTCCAAGACTATTTAGGATTTTGACTCTGCTAAATGGAAGGTCTCCAACTGGATTCATATTTGAGTCAGCATGGGCTAATTTCATTATAAATCTTCTCATGTTTATGCTTGCCAGCCATGTTGTTGGCTCTTGCTGGTACCTCTTTGGTCTACAGAGGGTTAATCAATGTTTGAGAGATGCCTGCAGTAAGTCTAACATCAAAGGATGCATTGATGTCATTGACTGTGGACATGGTCGAACTGGAAACAACCAGTCTGCAGCAGGCCAAACATCATCTATGTGGAACAACAATTCAGATGCCATTGCTTGTTTGAATCCTTCTCCTAATGGTTTTCGTTATGGAATCTATGTCAGTGCTGTTCCACTTACTATTGAAACTAGCATGGTCAACAAATATGTGTATTCTCATTTTTGGGGATTGCAGCAAATCAGTACTCTGGCTGGTGGTCTAACCCCAAGCTATTTTGTATGGGAAGTCATGTTTGCAATTGCCATCATAGGATTGGGACTCTTGCTTTTTTCACTGCTCATTGGAAACATACAAAACTTTCTCCAAGGTCTTGGAAGGAGGAGGCTAGAAATGCTACTTAGAAGCCGTGATGTTGAGCAATGGATGAGGCATCGTCGCTTACCTGAAAATCTAAGAAAGAGAGTGCGACAGGCCGAACGATATAATTGGGCTGCAACAAGAGGAGTGAATGAAGAAACACTTCTTGAGAATTTGCCAGAAGATCTTCAAACCGAAATAAGGCGTCATCTCTTCAATTTTATTAAGAAAATTAGAATTTTCTCTCTGATGGATGAGCCTATTTTGGATGCTATTTGTGAGAGACTAAGACAGAAGACATATATAAATGGAAGTAGAATTATGAGTTATGGTGGTGAAGTTGGGAAGATGGTTTTTGTTGTGCGTGGAAAATTGGAGAGCATTGGAGAAAATGGAATTGCAGTTCCTTTATCTGAAGGAGATGCTTGTGGTGAAGAACTTCTAACATGGTATCTTCAACATTCTTCTGTAAGCAAAGATGGTAAAAAAGTAAGGCTTCCAGGACAGAGGTTGCTTAGCAACAGGACAGTAAAGTGCTTAACAAATGTTGAGGCTTTTTCACTCAGAGCTGCAGATCTTGAAGAAGTCACAACCATTTTCATGAGATCCTTTAGGAATGTGCTTGTTCAAGGACCTTTAAGGTATGAATCACCTTATTGGAGATCCCTTGCAGCAACCCAAATTCAGGTTGCATGGAGATATTGGAAGAAACGTCAAAAGTTATCAGATCAAACATTAAAGTTACAGGTTGTACCATAA 2139 0.3852 MDSYEKETSLKVKEHVAALNAAHGTGNLVQQTVVVIGNKVEKCKKEIFSPLNHWNNTHDRENEHLGKSGLLGMCDDPYCTTCPTYFKASKQRSPKALNEFDSKFHNALYGDAKGFGRKLLSFCSSCVPGVINPHTKLVQQWNKFLAIFCMVAIFVDPLFLFLIYVQKDFNCIAINWTMTETLVLLRSMNDFVYFLNILLQFRLAYVSPESRVVGAGDLVDDPKKISVRYLQSYFLVDLFVVLPLPQIMILSVLPRHLGLSGANYAKNLLRAVILVQYIPRLFRILTLLNGRSPTGFIFESAWANFIINLLMFMLASHVVGSCWYLFGLQRVNQCLRDACSKSNIKGCIDVIDCGHGRTGNNQSAAGQTSSMWNNNSDAIACLNPSPNGFRYGIYVSAVPLTIETSMVNKYVYSHFWGLQQISTLAGGLTPSYFVWEVMFAIAIIGLGLLLFSLLIGNIQNFLQGLGRRRLEMLLRSRDVEQWMRHRRLPENLRKRVRQAERYNWAATRGVNEETLLENLPEDLQTEIRRHLFNFIKKIRIFSLMDEPILDAICERLRQKTYINGSRIMSYGGEVGKMVFVVRGKLESIGENGIAVPLSEGDACGEELLTWYLQHSSVSKDGKKVRLPGQRLLSNRTVKCLTNVEAFSLRAADLEEVTTIFMRSFRNVLVQGPLRYESPYWRSLAATQIQVAWRYWKKRQKLSDQTLKLQVVP 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01562 712 Gene3D - 137 464 - -
Car08g01562 712 Gene3D Jelly Rolls 538 662 IPR014710 -
Car08g01562 712 ProSiteProfiles cAMP/cGMP binding motif profile. 540 608 IPR000595 -
Car08g01562 712 PANTHER CYCLIC NUCLEOTIDE-GATED CATION CHANNEL PROTEIN 12 706 - -
Car08g01562 712 Gene3D Helix hairpin bin 469 532 - -
Car08g01562 712 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 706 - -
Car08g01562 712 SUPERFAMILY Voltage-gated potassium channels 133 468 - -
Car08g01562 712 CDD CAP_ED 540 656 IPR000595 -
Car08g01562 712 SUPERFAMILY cAMP-binding domain-like 469 659 IPR018490 -
Car08g01562 712 Pfam Ion transport protein 143 467 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01562 Car-Chr8 24810739 24819627 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01562 36 618 Ion Channels AT3G17700 59.864 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01562 K05391 - ccaj:109789004 1056.2