Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01560 ATGGAATATCACAGTGGAGGTAGTGGTTCACCTGGTGatcatcatcatcatcatgatGGTTCTTCAGATTCTCAGAGAAGAAAGAAACGTTACCACCGTCACACTGCTAATCAGATTCAAAGGCTTGAAGCAATGTTCAAAGAGTGTCCTCATCCAGATGAGAAACAAAGGTTGCAATTAAGCAGAGAATTAGCTTTGGCTCCTAGACAGATCAAATTTTGGTTTCAGAACAGAAGGACTCAGATGAAGGCACAACATGAAAGGGCTGATAATTGTGCACTAAGGGCAGAGAATGATAAAATAAGATGTGAGAATATAGCTATAAGGGAAGCCCTTAAGAATGTGATTTGCCCTTCTTGTGGTGGTCCTCCAATCAATGATGATTGTTACTTTGATGAACAAAAGTTGAGAATTGAAAATGCTCAACTCAAAGAAGAGCTTGATAGAGTATCAAGCATTGCTGCTAAATACATTGGAAGACCAATCTCACAACTTCCACCAGTTCAACCAATTCACATATCATCATTAGACTTATCAATGTCAAGTTATGGTGGCCAAGGACTTGGTGGACCATCACTTGATCTTGATCTTCTACCAGGAAGTTCATCTTCAGCAATGCAAAATGTTCCTTACCAACCAGCTTGTCTTTCTGACATGGAAAAGTCACTCATGTCTGACATTGCAACAAATGCAATGGATGAATTAGTTAGACTTTTGCAAACTAATGATCCTTTGTGGATTAAATCTAACACTGATGGAAAAGATGTTCTTAACCTTGAAGCTTATGAAAGAATATTTCCTAAGACTAATAATCGGTTGAAGAATCCGAATCTTCGCATCGAAGCTTCCAGAGATTCCGGTGTTGTCATCATGAATAGCTTGACTTTGGTTGAAATGTTCATGGATCCCAACAAATGGATGGAACTATTTCCTACCATTGTGACAATGGCAAGAACTATTGAAGTTATATCATCCGGAATTATGGGTCATAGTGGTTCATTACAATTGATGTATGAAGAGTTGCAAGTACTTTCTCCACTTGTTCCTATTAGAGAATTTTACTTTCTGAGGTACTGTCATCAAATTGAGCAAGGCTTATGGGCCATAGTTGATGTTTCATATGAATTTCCTCATGACAACCAATTTACTCCTCAATTTCGATGCCACCGTCTTCCTTCCGGTTGCTTCATTCAAGACATGCCTAATGGCTATTCCAAGGTTACTTGGATTGAACATGTGGAGATTGAAGATAAAAATCCAATTCATAGACTTTATAGAAATGTTATTTATAGTGGTGTGGCTTTTGGAGCTGAAAGATGGCTCACTACTCTTCAGAGGATGTGTGAAAGGCTTGCTTGTCTTATGGTGTCCGGAAATTCTACCCGCGATCTTGGAGGAGTATTGTCAAATAGCAGCTATATCTTAGCAGAATTGAACAAATTGTTGATTGTTTCGAGATATGTTATTCAGTACAAAATATTCATAAGTGCATCAGCTAGTCATAGATGGACCACACTTTCAGCTTTGAATGAGATTGGAGTCAGAGTGACTGTGAGGAAGAGTACAGACCCTGGTCAGCCTAATGGTGTTGTCCTAAGTGCAGCAACTACCATTTGGCTTCCTCTCCCTCCACAAACTGTTTTCAATTTCTTTAAAGATGAAAGGAAAAGATCTCAGTGGGATGTTCTTTCTAATGGTAATGCTGTTCAAGAGGTTGCTCATATAGCTAATGGTTCACACCCTGGTAACTGCATCTCTGTGCTTAGGGCATTCAACACAAGTCAAAACAACATGTTAATTCTTCAAGAAAGCTGTGTGGATTCATCTGGCTCCCTTGTAGTCTATTGTCCAGTTGATTTACCAGCTATCAACATAGCAATGAGTGGTGAAGACCCTTCTTACATTCCATTACTTCCCTCAGGTTTCACAATCACTTCAGATGGAaaccaaaacgacaacaacaacaataacaacaacaacaacGTTGGTGATGGAGCATCAACAAGCTCAAACACAAACCTAGGAGGAGGATCCTTAATAACAGTTGCATTCCAAATTATGGTTAGTAGTTTACCATCTGCAAAACTCAACATGGAGTCTGTTGCAACTGTTAATGGACTTATTGGTGAAACTGTCCAACACATAAAAGCTGCTTTGAATTGTCCTAGTTCCGGATGa 2178 0.3825 MEYHSGGSGSPGDHHHHHDGSSDSQRRKKRYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELALAPRQIKFWFQNRRTQMKAQHERADNCALRAENDKIRCENIAIREALKNVICPSCGGPPINDDCYFDEQKLRIENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMSSYGGQGLGGPSLDLDLLPGSSSSAMQNVPYQPACLSDMEKSLMSDIATNAMDELVRLLQTNDPLWIKSNTDGKDVLNLEAYERIFPKTNNRLKNPNLRIEASRDSGVVIMNSLTLVEMFMDPNKWMELFPTIVTMARTIEVISSGIMGHSGSLQLMYEELQVLSPLVPIREFYFLRYCHQIEQGLWAIVDVSYEFPHDNQFTPQFRCHRLPSGCFIQDMPNGYSKVTWIEHVEIEDKNPIHRLYRNVIYSGVAFGAERWLTTLQRMCERLACLMVSGNSTRDLGGVLSNSSYILAELNKLLIVSRYVIQYKIFISASASHRWTTLSALNEIGVRVTVRKSTDPGQPNGVVLSAATTIWLPLPPQTVFNFFKDERKRSQWDVLSNGNAVQEVAHIANGSHPGNCISVLRAFNTSQNNMLILQESCVDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTITSDGNQNDNNNNNNNNNVGDGASTSSNTNLGGGSLITVAFQIMVSSLPSAKLNMESVATVNGLIGETVQHIKAALNCPSSG 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01560 725 Pfam Homeodomain 28 83 IPR001356 GO:0003677
Car08g01560 725 ProSiteProfiles 'Homeobox' domain profile. 25 85 IPR001356 GO:0003677
Car08g01560 725 SUPERFAMILY Bet v1-like 218 451 - -
Car08g01560 725 CDD START_ArGLABRA2_like 221 449 - -
Car08g01560 725 Gene3D - 13 99 - -
Car08g01560 725 Pfam START domain 227 450 IPR002913 GO:0008289
Car08g01560 725 SUPERFAMILY Bet v1-like 498 716 - -
Car08g01560 725 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 12 722 IPR042160 -
Car08g01560 725 SMART START_1 226 450 IPR002913 GO:0008289
Car08g01560 725 SUPERFAMILY Homeodomain-like 4 85 IPR009057 -
Car08g01560 725 MobiDBLite consensus disorder prediction 9 26 - -
Car08g01560 725 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 12 722 - -
Car08g01560 725 Gene3D - 225 450 IPR023393 -
Car08g01560 725 MobiDBLite consensus disorder prediction 646 670 - -
Car08g01560 725 ProSitePatterns 'Homeobox' domain signature. 60 83 IPR017970 GO:0000981|GO:0006355
Car08g01560 725 SMART HOX_1 26 89 IPR001356 GO:0003677
Car08g01560 725 ProSiteProfiles START domain profile. 217 453 IPR002913 GO:0008289
Car08g01560 725 CDD homeodomain 27 86 IPR001356 GO:0003677
Car08g01560 725 MobiDBLite consensus disorder prediction 1 34 - -
Car08g01560 725 Coils Coil 133 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01560 Car-Chr8 24778008 24782294 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01560 23 724 Homeobox Transcription Factor Family AT1G73360 63.944 0.0 898
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car08g01560 START 1.2e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01560 K09338 - gmx:100809075 1157.51