Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01559 ATGGAGATTAAGAACCAAGTAGAAGGCACGAAATCGACTATAATCGAGACAGAAAGTAAGTGTCATTCCGAAGGTGGAGAACAGCCGGAAAATGTTGCGAAATCGCAGGATATACCTTCTGTTGGAAATGGAAACAACCTTACTCCCAAGGTGAGGAAACCGTATACCATCACTAAACAAAGGGAGAAGTGGACTGACAAAGAGCATCAAAAGTTCGTCGATGCTTTGAAATTGTATGGTCGTGGCTGGCGTCAAATTGAAGAACACATAGGAACCAAAACCGCGGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCTAAGGTTGTGCGCGAACATGATGGCAGCGCCGAAAGTTCTATTCAACCGATTGTCATACCTCCTCCTCGGCCTAAGAGAAAACCCCTTCATCCGTACCCCCGCAAATCAGTTGACTCTATCAAAGGACAGCCCGTTCCAAACAAATCAGAAACATCTCCATCAGTTAATCTGTCAGTTGCAGAAAATGACACTCAATCTCCAACCTCTGTACTATCTGCATTTGCTTCCGAAGCATTTGGGTCGGCAACATTTTCTGAGCAGACTAACAGATGCCTTTCTCCAAATTCTTGCACCACCGAGACTCACCCGATCAACTTGTCGCCTGTTGAAAAAGAAAATGATTGCATGACATCCAAACCATCTGAGGAGGGAGAGAAAGAATCTCTAGCCACAGTTCCTTTATCTACCGACTCAAAGCCACTTATTTGCATGAAGTCCGAGATTAGTTCCTCTCAGGAAACTCAATGTTTCAAAGAAGATGCTGCGAATAAACAACACATCACTAGTATCAAGCTGTTTGGTAGAACAGTCTCCATGATTGATAATCAGAAACCGATGAAGGAAGATGATGATGATAATACTAAGCCGATAACTATCAAATCTGATGATGAAACGAACAATGTTGAGAATGAGAAAGTTGGTCAAGAAGGGATATCAGGGCAACTTGAAACACAATTATCGCTAACCATGTGTAATGGTATGGAAAACCCGAATGAAAATCAGTGCGTAGGCGAGTGTGCAGCTGATGTATCGAGGTGGAGTTTGTACCAAGGCCTTCCAGCTGTCAACTTCAAGACATCCTGCAATCATCAGATTCTTAATCCTGTGCCACTTAGGCCATTTTTGAAGGTAAGAACAAGAGAAGAAGAAAGTTCTTGCACTGGTTCTAATACTGAATCAGTTTGTGATAACACTGTTGATTCTCAAACTCAAAAACATCATCAGAAATCAGGGAGAGGGTTTGTACCATATAAAAGATGTTTAGCTGAAAGAGATGAAAATTCTTTAATTGTTGCTTTTGAAGAGAGAGAGGGACAAAGAGCTCGCGTTTGTTCATAA 1380 0.4188 MEIKNQVEGTKSTIIETESKCHSEGGEQPENVAKSQDIPSVGNGNNLTPKVRKPYTITKQREKWTDKEHQKFVDALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVREHDGSAESSIQPIVIPPPRPKRKPLHPYPRKSVDSIKGQPVPNKSETSPSVNLSVAENDTQSPTSVLSAFASEAFGSATFSEQTNRCLSPNSCTTETHPINLSPVEKENDCMTSKPSEEGEKESLATVPLSTDSKPLICMKSEISSSQETQCFKEDAANKQHITSIKLFGRTVSMIDNQKPMKEDDDDNTKPITIKSDDETNNVENEKVGQEGISGQLETQLSLTMCNGMENPNENQCVGECAADVSRWSLYQGLPAVNFKTSCNHQILNPVPLRPFLKVRTREEESSCTGSNTESVCDNTVDSQTQKHHQKSGRGFVPYKRCLAERDENSLIVAFEEREGQRARVCS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01559 459 MobiDBLite consensus disorder prediction 29 53 - -
Car08g01559 459 ProSiteProfiles SANT domain profile. 59 110 IPR017884 -
Car08g01559 459 PANTHER PROTEIN REVEILLE 7-RELATED 3 446 - -
Car08g01559 459 SMART sant 60 108 IPR001005 -
Car08g01559 459 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
Car08g01559 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Car08g01559 459 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Car08g01559 459 MobiDBLite consensus disorder prediction 207 221 - -
Car08g01559 459 Pfam Myb-like DNA-binding domain 61 104 IPR001005 -
Car08g01559 459 CDD SANT 63 106 IPR001005 -
Car08g01559 459 Gene3D - 63 110 - -
Car08g01559 459 MobiDBLite consensus disorder prediction 113 170 - -
Car08g01559 459 PANTHER SWI/SNF COMPLEX-RELATED 3 446 - -
Car08g01559 459 MobiDBLite consensus disorder prediction 1 54 - -
Car08g01559 459 MobiDBLite consensus disorder prediction 149 170 - -
Car08g01559 459 MobiDBLite consensus disorder prediction 207 237 - -
Car08g01559 459 SUPERFAMILY Homeodomain-like 55 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01559 Car-Chr8 24720615 24725297 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car08g01559 Myb_DNA-binding 9.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01559 - - gmx:778089 569.311