Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01558 ATGGTTACTCTTTCTTCTGCTACTTCTATGGCTAACATTGTTATTGGAATAGCTTCTCTTCCTCTACCTTCATTACCCTCAACAAATTCAAACTCTTACACTCTCAACCATAAAATTAAGACCCAAAAACATAATCTTTATCTGAATTTTTCAGAAACCAACAACACAACAACCTTATTTCCTTCTACCTTatcatcatcatcgtcatcaCTTAGAAACAAAAGTAGTTGTTCTGTGTTGGCTTGTCTCCCTTCATCTTCTAGTTCTCCTTCAACTAAGCTATATGTTAGTGGGCTATCATTTCGAACAACTGAAGAGAGCTTGCGAAATGCATTTAAGAATTTCGGTCAACTTGTAGAAGTCAATCTGGTGATGGATAAAGTTGCGAATAGACCAAGAGGGTTCGGTTTCCTTCGTTATGAAACGGAAGAGGAATCGAAGAAGGCTATTGAGGGTATGCATGGAAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAGTTGCCAAACCAAGATCAAAGATACAGCAGAGATTCAACCAAAACACTTTGTAG 552 0.3659 MVTLSSATSMANIVIGIASLPLPSLPSTNSNSYTLNHKIKTQKHNLYLNFSETNNTTTLFPSTLSSSSSSLRNKSSCSVLACLPSSSSSPSTKLYVSGLSFRTTEESLRNAFKNFGQLVEVNLVMDKVANRPRGFGFLRYETEEESKKAIEGMHGKFLDGRVIFVEVAKPRSKIQQRFNQNTL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01558 183 SMART rrm2_1 93 166 IPR003954 GO:0003676
Car08g01558 183 Gene3D - 39 180 IPR012677 -
Car08g01558 183 SUPERFAMILY RNA-binding domain, RBD 84 180 IPR035979 GO:0003676
Car08g01558 183 SMART rrm1_1 93 166 IPR000504 GO:0003723
Car08g01558 183 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 163 IPR000504 GO:0003723
Car08g01558 183 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 170 IPR000504 GO:0003723
Car08g01558 183 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 6, CHLOROPLASTIC 26 181 - -
Car08g01558 183 PANTHER NUCLEOLAR PROTEIN 8 26 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01558 Car-Chr8 24716698 24720152 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01558 92 181 Eukaryotic Initiation Factors Gene Family AT4G34110 29.787 1.40e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01558 - - gmx:100305561 166.007