Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01555 ATGTCACCAGTTGGATTACCACCAGGTTTCAGATTTCATCCTACTGATGAAGAGCTTGTCAACTATTATCTAAAGAGAAAAATCAGTGGTCAAGAAATTGAACTTGATATCATTCCTGAAGTTGATCTTTACAAATGTGAACCTTGGGAATTAGCAGAGAAATCATTTTTACCAAGTAGAGATCCAGAGTGGTACTTTTTTGGACCAAGAGACAGAAAATACCCTAATGGATTCAGAACAAATAGAGCAACAAGAGCAGGATACTGGAAATCTACTGGAAAAGATAGAAGAGTTTCATGCCAAAGTAGACCTATTGGTATGAAGAAGACTTTGGTTTACTATAGAGGTAGAGCTCCTCAAGGAATTAGAACTGATTGGGTTATGCATGAATATCGCCTCGACGACAAAGATTGTGAAGACAACTCCGGATTACAGGATACTTATGCTTTGTGTCGCGTGTTCAAGAAAAATGGAATCTGTTCTGATATGGAAGAGCAACAAGGACAATGTAGCATGTCACTAATTGAGTGCTCTCAAACCATAATCAATGAGTGTGAAACAATGTCACCAGACATACTAGGAACATCATCGTCATGCTTAGAAGAGGACGACAAAGATGATTCATGGATGCAATTCATTACAGACGATGCATGGTATTCTTCTAATGCAGCAATGGTTGGTGGTGAAGAACTTTCACATGTTACATTTACAAATTAA 717 0.3794 MSPVGLPPGFRFHPTDEELVNYYLKRKISGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVSCQSRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKDCEDNSGLQDTYALCRVFKKNGICSDMEEQQGQCSMSLIECSQTIINECETMSPDILGTSSSCLEEDDKDDSWMQFITDDAWYSSNAAMVGGEELSHVTFTN 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01555 238 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 238 - -
Car08g01555 238 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Car08g01555 238 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Car08g01555 238 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 238 - -
Car08g01555 238 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Car08g01555 238 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01555 Car-Chr8 24701797 24706132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01555 1 227 NAC Transcription Factor Family AT3G17730 78.008 5.59e-135 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car08g01555 NAM 1.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01555 - - gmx:100784495 476.863