Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01554 ATGGTTAAGAAGAAGCGGACTGATGGTCCTAGTGAAAGCTCTGATGCTCCACCCCATCGTCCGGCTGAGAGGAGTGCCCCTCCTCAACAACAACAGGCTGCTATAGCTGGAGGAGTAGGACCTCAAGGAGGGCGAGGTTGGGGTCCCCAAggtggacgagggggttatggtggtcgtggtggtcgtggaggGCCCCAACAACAGCAATACGGTGCACCTCCCGAGTATCAAGGAAGAGGAAGAGGAGGACCTCCCCAGTCCCAACAGCAGTATGGCGGACCCCCTGAGTATCAAGGAAGGGGAAGGGGAGGGCCTCCCCAGCCCCAACAGCAGTATGGTGGCCCAGCAGAGTATCAAGGCAGGGGTAGGGGGCCTTCTCAGCAAGGAGGCCGTGGATAtggtggtggccgtggtggccacggtggtgtgggcggtggCCATGACGTCGTTCCTTCATATGGTGGCCCACCTAGGCCACCAGCACCCGAGCTGCACCAAGCTACACCCGTTCCTTGTCAAGTTGGGGAGTCTCCTCCACCTGCTCCATCTGAGGCTAGTTCATCTTCCCAGCCGCCAGAAGTGTCCGAGGTGGAACAACTGGGGCAGATGAGTATTCATTCTGAAGATACTCCAGCTCCTCCACCTCCTGCAAGTAAATCATCGATGAGGTTTCCCCTTCGCCCTGGAAAAGGGAGCTGTGGCAGGAAATGTGTTGTCAAGGCAAACCATTTCTTTGCTGAGTTGCCTAATAAAGATCTGCATCAATATGATGTAACAATCACTCCAGAAGTGACTTCTAGAGGCGTGAACCGTGCTGTTATGGAGCAACTTGTCAGGCTGTACCGGGAATCTCACCTTGGAAAGAGACTCCCAGCTTATGATGGCCGAAAGAGCCTCTATACTGCAGGGCCGCTTCCCTTTATTTCAAAGGACTTTAGAATCACACTTGTGGATGACGATGATGGAACAGGAGGGCAGAGGAGGGATAGAGAATTCAAAGTTGTGATTAAGTTGGCTGCACGGGCTGACCTTCACCACCTGGGTCTCTTTTTGGAGGGGAGGCAAACTGATGCACCTCAGGAAGCTCTGCAGGTTCTTGACATTGTTCTTCGTGAGCTGCCTACTACAAGGTACTGTCCAGTTGGAAGATCATTTTATTCACCTGATTTGGGTAGAAGGCAGCCTTTGGGTGAGGGTTTGGAAAGTTGGCGCGGTTTCTACCAAAGCATTCGTCCTACTCAAATGGGACTGTCGTTGAACATTGATATGTCCTCAACTGCATTTATTGAGCCATTGCCTGTCATAGATTTTGTCACTCAGTTGCTGAACAGAGACGTCTCTACCCGCCCTCTGTCTGATGCTGACAGAGTAAAGATAAAAAAAGCACTCCGAGGTATCAAAGTTGAAGTTACACATCGTGGCAACATGCGGAGAAAATATCGTATCTCTGGTCTGACTTCACAGGCTACTAGAGAGTTGACATTCCCTGTGGACGAGAGGGGAACTATGAAGTCTGTTGTTGAGTACTTCTATGAGACATATGGCTTTGTTATTCAACATACTCAGTGGCCTTGTTTGCAAGTGGGCAACACACAGAGGCCAAACTACCTACCAATGGAGGTATGCAAAATTGTGGAAGGGCAGAGATATTCTAAAAGGTTAAATGAGAGGCAAATCACTGCCTTGCTCAAAGTCACCTGTCAACGCCCGCTTGATAGGGAACGGGACATCATGCAGACCGTACATCACAATGCCTATCACGAAGATCCTTATGCTAAAGAGTTTGGAATCAAAATTAGTGAGAAGCTTGCTCAAGTTGAAGCTCGCATCCTTCCTGCGCCTTGGCTCAAATATCATGATACAGGTAGAGAAAAGGATTGTCTACCCCAAGTTGGTCAGTGGAATATGATGAACAAGAAAATGGTCAACGGGGGAACAGTCAACAACTGGTTCTGCGTTAACTTTTCGAGGAATGTGCAAGACAGTGTTGCACGTGGCTTCTGCTGTGAACTTGCCCAAATGTGTTATATATCTGGCATGGCATTTAATCCAGAGCCAGTAGTTCCCCCACTTAGTGCACGTCCTGACCAAGTGGACAAGGTTCTGAAAACACGATATCAGGATGCGAAGAACAAGCTGCAGGGAAGGGAGTTGGACCTGCTCATTGTTATTTTGCCTGATAATAATGGCTCTCTCTATGGTGATCTCAAACGTATATGTGAGACTGAACTGGGGCTTGTTTCCCAATGTTGTTTAACTAAACATGTATTTAAGATGAGTAAACAATATCTGGCGAATGTTGCGTTGAAAATTAATGTAAAGGTCGGTGGAAGGAACACTGTTCTTGTTGATGCACTTTCGCGACGCATTCCATTAGTCAGTGATAGGCCTACCATTATTTTCGGAGCTGATGTGACTCATCCACACCCTGGAGAGGATATGAGTCCATCAATAGCAGCTGTTGTTGCTTCTCAAGATTGGCCTGAAATTACCAAGTATGCTGGTTTGGTTTGTGCCCAAGCACATAGGCAGGAGCTCATACAAGATCTTTTCAAACAATGGCAAGATCCAGTCAGAGGAACATTGACTGGTGGAATGATCAAGGAGCTTCTTATATCTTTCCGGAGGGCTACTGGACAAAAGCCCCAGCGCATTATATTTTACAGAGATGGAGTCAGCGAAGGACAGTTTTATCAAGTTTTGTTGTTTGAGCTTGATGCAATTCGTAAGGCTTGTGCTTCCCTTGAACCCAACTATCAGCCTCCCGTGACTTTTGTGGTGGTTCAAAAACGTCACCATACTAGGCTCTTTGCCAGTGACCACCGTGACAAGAGTTCTGTTGATCGAAGTGGCAATATATTGCCTGGAACCGTTGTGGATTCTAAGATCTGTCATCCGACCGAATTTGATTTCTATCTTTGCAGTCACGCCGGAATACAGGGGACGAGTCGTCCAGCCCACTATCATGTGCTGTGGGATGAAAATAATTTTACTGCAGATGCATTACAAAGTCTCACAAATAATTTATGCTACACATATGCCAGATGCACTCGGTCTGTTTCAATTGTGCCCCCTGCTTATTATGCTCATTTGGCTGCATTCCGTGCAAGGTTCTATATGGAACCGGAAACTTCCGATAGCGGGTCTATGACAAGTGGTGCAGTTTCTGGTCGTGGTATGGGTGGCGGTGTGGGGCGTAGTACTCGGGCACCTGGTGCTAATGCTGCCGTGAGACCCTTACCCGCATTGAAGGAGAATGTGAAGAGGGTCATGTTTTATTGCTGA 3285 0.4667 MVKKKRTDGPSESSDAPPHRPAERSAPPQQQQAAIAGGVGPQGGRGWGPQGGRGGYGGRGGRGGPQQQQYGAPPEYQGRGRGGPPQSQQQYGGPPEYQGRGRGGPPQPQQQYGGPAEYQGRGRGPSQQGGRGYGGGRGGHGGVGGGHDVVPSYGGPPRPPAPELHQATPVPCQVGESPPPAPSEASSSSQPPEVSEVEQLGQMSIHSEDTPAPPPPASKSSMRFPLRPGKGSCGRKCVVKANHFFAELPNKDLHQYDVTITPEVTSRGVNRAVMEQLVRLYRESHLGKRLPAYDGRKSLYTAGPLPFISKDFRITLVDDDDGTGGQRRDREFKVVIKLAARADLHHLGLFLEGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSTRPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPLDRERDIMQTVHHNAYHEDPYAKEFGIKISEKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWFCVNFSRNVQDSVARGFCCELAQMCYISGMAFNPEPVVPPLSARPDQVDKVLKTRYQDAKNKLQGRELDLLIVILPDNNGSLYGDLKRICETELGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDMSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGTLTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASDHRDKSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAVSGRGMGGGVGRSTRAPGANAAVRPLPALKENVKRVMFYC 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01554 1094 CDD Piwi_ago-like 590 1040 IPR045246 -
Car08g01554 1094 SMART PAZ_2_a_3 436 568 IPR003100 GO:0005515
Car08g01554 1094 Pfam Glycine-rich region of argonaut 113 210 IPR024357 -
Car08g01554 1094 MobiDBLite consensus disorder prediction 180 206 - -
Car08g01554 1094 SUPERFAMILY Ribonuclease H-like 706 1041 IPR012337 -
Car08g01554 1094 MobiDBLite consensus disorder prediction 1045 1072 - -
Car08g01554 1094 Pfam Argonaute linker 1 domain 380 430 IPR014811 -
Car08g01554 1094 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 123 1093 - -
Car08g01554 1094 Pfam Argonaute linker 2 domain 572 618 IPR032472 -
Car08g01554 1094 Pfam PAZ domain 436 561 IPR003100 GO:0005515
Car08g01554 1094 PANTHER PROTEIN ARGONAUTE 1A 123 1093 - -
Car08g01554 1094 Gene3D paz domain 425 550 - -
Car08g01554 1094 Pfam Mid domain of argonaute 629 704 IPR032473 -
Car08g01554 1094 Pfam Piwi domain 721 1040 IPR003165 GO:0003676
Car08g01554 1094 SMART DUF1785_2 379 431 IPR014811 -
Car08g01554 1094 ProSiteProfiles PAZ domain profile. 432 546 IPR003100 GO:0005515
Car08g01554 1094 Gene3D - 610 783 - -
Car08g01554 1094 ProSiteProfiles Piwi domain profile. 720 1041 IPR003165 GO:0003676
Car08g01554 1094 Gene3D - 789 1094 IPR036397 GO:0003676
Car08g01554 1094 MobiDBLite consensus disorder prediction 1 19 - -
Car08g01554 1094 Pfam N-terminal domain of argonaute 235 370 IPR032474 -
Car08g01554 1094 SUPERFAMILY PAZ domain 238 583 IPR036085 GO:0005515
Car08g01554 1094 CDD PAZ_argonaute_like 431 545 - -
Car08g01554 1094 SMART Piwi_a_2 720 1041 IPR003165 GO:0003676
Car08g01554 1094 MobiDBLite consensus disorder prediction 1 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01554 Car-Chr8 24648267 24656099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01554 96 1094 Eukaryotic Initiation Factors Gene Family AT1G48410 78.386 0.0 1607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01554 K11593 - gmx:100780375 1753.8