Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01547 ATGAACGGAAAAGCCTCCGTTTCTAAGGAGCTTCATGCCAAACACACTAAGATCTTAGAGGGGCTTCTTAAGCTACCTGACAATAGAGAATGTGCAGATTGTTGGACCAAGGCACCACGATGGGCTAGCGTAAACTTAGGAATTTTCATTTGCATGCAATGTTCGGGAATTCACCGGAGTCTTGGAGTGCATATATCAAAGGTCCGGTCCACGACTTTGGATACATGGTTGCCAGATCAAGTTTCTTTCATGCAATTTATGGGTAATGTGAAGTCAAATAAGTATTGGGAGGCTAAACTTCCACCAAATTTTGACAGAAATGGATATGGAGTCGAGAAGTTTATCCGTGCCAAGTATGTAGAGAAAAGGTGGGCTTTGCAAGGTGAACTGCATTCAGCTTCAAAGTCAGCTGAAGTGATATTTGAGTTCAAAGAGTCACCAGCTACCGAGGCCAAAAGTACTATTCAGAAAAACAGAAGATTGTCTCTTGAAGAAAGCATTCTTGTGAATCACATGACACAAATTCGGCCTCCAATAGCAAGATTTCAAGAGGGCCCCTTAGATTTACAAATGAAGATTTCACCACCAATAAAGAGACCATCAGCATCACTTGATTTTGATAACTCGGTCAGAAATAGTAATGGTAATGTCGATCTTTTTGGCCTGCTTTCGACCGAAGATGATAAACAGAATACCTCAACTACACCTCCTACTTGGACAACATTTGATTGA 732 0.4126 MNGKASVSKELHAKHTKILEGLLKLPDNRECADCWTKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQFMGNVKSNKYWEAKLPPNFDRNGYGVEKFIRAKYVEKRWALQGELHSASKSAEVIFEFKESPATEAKSTIQKNRRLSLEESILVNHMTQIRPPIARFQEGPLDLQMKISPPIKRPSASLDFDNSVRNSNGNVDLFGLLSTEDDKQNTSTTPPTWTTFD 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01547 243 SMART arf_gap_3 5 130 IPR001164 GO:0005096
Car08g01547 243 Pfam Putative GTPase activating protein for Arf 17 126 IPR001164 GO:0005096
Car08g01547 243 CDD ArfGap 19 119 - -
Car08g01547 243 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Car08g01547 243 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Car08g01547 243 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Car08g01547 243 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Car08g01547 243 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 137 IPR001164 GO:0005096
Car08g01547 243 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 1 243 - -
Car08g01547 243 MobiDBLite consensus disorder prediction 223 243 - -
Car08g01547 243 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 243 IPR044520 GO:0005096
Car08g01547 243 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01547 Car-Chr8 24555249 24559338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01547 19 199 C2H2 Transcription Factor Family AT4G05330 38.503 9.74e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01547 K12486 - gmx:100802691 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00132 06 1643199 1657763 Car08g01547 08 24555249 24559338 PCT