Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01543 aTGTCTTCTGCTGACGGTAACGGCAGCAATCTTCCCAACTCCGACGAACTCCGTCGTTACTTTTGCCACCAGTGCGAACGCACCGCCTTCATTTCAACTTCCTCCACCGATCTAATCTGTCCCAATTGTAACGGTACCTTCCTCGAAGaactcgaaaccccaatccctaaccctaaccctaatcccaatccaaatcctattccaCCGTTTTTCTCCTACACTACCGACTTTCCCGCTGCGAATTTCTCGTTTCCTATTGGAAATTCTCAACCGTTGGAAGATCTCTCCGTTTTATTCGGTAACCGATCGTCGCCGTCGCCGGCTTCTCCTTTCGGTCAAGCTTTTAATCCTGTCGCTTTTATTCAAAACTATCTCCAGAACATAAGACCGGGAGCGGGAGGCAACGTTCAGTTCTTCATCGACGATGCGGATGATCCGACTGGACCATTTCGGTTTCCTGGAAACGCGAATCCGGGAGATTACTTTTTCGGACCAGGACTTGAGGATCTGATCCAGCAACTTGCTGAGAATGATCCGAGTCGGCGTGGGACTCCGCCGGCGTCGAAGTCTGCCGTGGAAAAACTTCCGGTTATATCAGTTACCGAGGAGCTGCTTGAGTCCGATTCGGCGCAGTGTGCTGTGTGTAAAGACACATTTGCCCTCGGTGAAAAGGCTAAGCAGATGCCGTGTAAGCATATATATCATACGGATTGTATCTTGCCGTGGTTGGAATTGCATAATTCTTGTCCTGTTTGTCGGTATGAGTTGCCTACAGATGATGCTGATTATGAGCAGAGGGCTCGAGGAGACGGTGTCGGGGGCGGTCCTGGTGGTGGTGGGGTTGATGATTCGCAGACAAGGAGATTTAGGATGTCGTTGCCGTGGCCGTTTAGGCAGGTACCTTCATCATCTTCGGTTGCCGGAACTAGTAATGCTGGGAATGTtaataataataacaataacagcaatagcaataGTGGGCAATCGGATACTGAAAGTAGAGGTAATCAGAGTTTTGAGCCGGAGACTAGACAAGAAGACCTCGACTGA 1050 0.4619 MSSADGNGSNLPNSDELRRYFCHQCERTAFISTSSTDLICPNCNGTFLEELETPIPNPNPNPNPNPIPPFFSYTTDFPAANFSFPIGNSQPLEDLSVLFGNRSSPSPASPFGQAFNPVAFIQNYLQNIRPGAGGNVQFFIDDADDPTGPFRFPGNANPGDYFFGPGLEDLIQQLAENDPSRRGTPPASKSAVEKLPVISVTEELLESDSAQCAVCKDTFALGEKAKQMPCKHIYHTDCILPWLELHNSCPVCRYELPTDDADYEQRARGDGVGGGPGGGGVDDSQTRRFRMSLPWPFRQVPSSSSVAGTSNAGNVNNNNNNSNSNSGQSDTESRGNQSFEPETRQEDLD 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01543 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 12 292 - -
Car08g01543 349 SUPERFAMILY RING/U-box 191 259 - -
Car08g01543 349 Pfam zinc-ribbon 19 51 IPR039525 GO:0061630
Car08g01543 349 SMART ring_2 212 252 IPR001841 -
Car08g01543 349 CDD RING-H2_RNF126_like 211 253 - -
Car08g01543 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 259 IPR013083 -
Car08g01543 349 MobiDBLite consensus disorder prediction 264 349 - -
Car08g01543 349 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
Car08g01543 349 Pfam Ring finger domain 211 253 IPR001841 -
Car08g01543 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 12 292 - -
Car08g01543 349 MobiDBLite consensus disorder prediction 297 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01543 Car-Chr8 24530851 24536053 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01543 153 268 C3H Transcription Factor Family AT5G01980 52.586 1.85e-36 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01543 - K11982 mtr:MTR_6g079660 448.358