Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01521 ATGGATCCAAAAGTGTGGGATGAATCACTGAAACATGCTTCCAATTTCATGTGTGAGAAGAATCTTAACACAATTGATAAATCAATTGTGTGCCCTACTCCAGAGAAGAAAGCTGAACCATTGCCCTTCAAATTCAAGGAGACACTAATACAGCTTCCAGAAAAGTACAGGACTATTGCTGATTTGTTTAGTCATATGAGTTGTTCGCTTAGATTGTTGCATCTGCGTAAAAAGACTCCAACTTTTCAAAATGTTTGCAACAAAGTTGAAGTTCTTGCCAAGAGAAACTTCTCCTATGCTCATCTTGCGCAAATGAAGTATATACTCCCTGAAGGTATAGAAATTGAAAAGGTGATTGTTCTTGATAAGAAGAGCTTGTGTATGAGACCGGATTTGAAGATCACTTTGGTATTTGAAGCTGTAAAAGATCACTCTGAACAATCCGCTGATATGGCTCTTGGACGATATTTTAATTCCAGGCTGATTAATTTCTTTAACATGCATCCCGAGGGTATTGATATTCCAGAGGCCACATTACCAGAGCCCTTTAGCCAAAGAGATTGTAACTTGATTTCCGAAGATGTGCCTGTAAATTCGTCAACAGAACTTTCATCAACTTCCAATCAAATTGAACCATTGCTGAACAATTCATATTTGTATCCATCTCTTAGAAGACCTTTTTCTCAGAAGAATGTTGCTAACCAGACCGAGCAAGTTCAGTGCTTTTCATCATCTAAAACTTCTCTGTCATCCCATGAATCTGACTGCCTAGATAGCCAAGAAAGTGAAAGCACATGGCAGAAGGAATCATTGTCAATATGTGTTCAACCAGATGTTATTAACACATCTGTACATAAGATCTCCACACCACATTCTGGTGGCCACAACAGTTTTGAAAGCCCCAATGTGAAAATTGTCTCTTATACTGATAGTTTGATGACACAGACACCTGCCCAGTCAGCACCTGAGAGATTGATGACACAGACACCTGCCCAGTCAGCACCTGAGAGATTGTTGCCTGGTTCTGATGTGAAGCTTCAGAACATGACTGCCCAAAAGTCTGCGTCATGTTTTAAGCCTGCAAAAAGAGTGCTTGACTTTGCACTCATGGAAGAAGATGATGATTTGGACAACAGAGTAGACGTCTTAGAATCTAGCAAAGCTCTCCGTGAGGGCTGCAAATACTTTGATTCTGTCTCCCTATCTCCGGAGGGTATTGATATTCCAGAGGCTGCACTACAAGAGCGCTTTAGCCAAAGGGCGTGTAACTTGATTTTCGAAGATGAGCTTGTAAATTCGTCAACAGAACTTTCATCAACTTCCAATCAAATTGAACCATTGCTGAACAAATCACATTTGTGTCCATCTTTTAGAAGTCATTTTTTTCAGAAGAATGTTGCTAACCAGACTGAGCAAGTTCAGTGTTTTTCATCATCTAAAACTTCTCTGTCATCCCACGAATCTGACTGCCTAGATAGTCAAAAAAGTGAAAGCACGTGGCTGAAAGGTTGTACCCCATTGTCTGATTGTTTGACTAATCCTAATGCAGAGAGAGGCAAGCAGAATGAATCATTGTCAGTGTGTGTTCAACCAGATGTTATTAATACATCAGTACATAATAGTATTTCCCCTCCACATTCTGTTAGCCGCAGTAGTATTGAAAGCCCTGATATGAAAATTGTCTCTTGTACTGATAGTTTGATGACACAGACACCCGCACAGTCAGCAGCACCTGGAATACTGTTGCCTTGTTCTGATGTTAAGCTTCAGAGCATGACTGCCGAAAAGTCTACATCACGTTTTAAGCCTGCAAAAAGAGTGCTTGACTTTTCATTCACGGAAGGGAATGATTGTTTGGACAACAGAGTAGACGTGCTAGAATCTAGCAAAGCTCTGCGTGAATTTGATTGCATCTCTAAACTAAGCAGAGGTTTTTCTGAGGATCCCAAATCTTTTGATTCTGTTTCTCTGGAGGTACCAGTGAACATTGGTTATTCCTTAGAGAAAACCAACCAAAATCAAACTGGTTTGGATGCACTGGATAACAATATTTCATCATTGGTGGAACTGGTTAATGTGATTGACTATATATTTAGATCTGTCCAAAGAACTCCAATCACAAAAGAGGAGCTCCTGCAAAAGATAATGATGAACTGTTTAGATTTTGTTGAAATTAGAGAAGCTGAAGAACAGATCGAGATTTTGGAAAAGTTGTTGCCAGATTGGATTTGTAAGAAGTTGGTTTGTTCCGGAGATACTATGTACTGTGTCAAGAATGCATTGGATTTTGACTCGGTTCGATCAAGACTTCTCAGCAATGTGACTGAAGGAGTTGAGTGA 2340 0.3983 MDPKVWDESLKHASNFMCEKNLNTIDKSIVCPTPEKKAEPLPFKFKETLIQLPEKYRTIADLFSHMSCSLRLLHLRKKTPTFQNVCNKVEVLAKRNFSYAHLAQMKYILPEGIEIEKVIVLDKKSLCMRPDLKITLVFEAVKDHSEQSADMALGRYFNSRLINFFNMHPEGIDIPEATLPEPFSQRDCNLISEDVPVNSSTELSSTSNQIEPLLNNSYLYPSLRRPFSQKNVANQTEQVQCFSSSKTSLSSHESDCLDSQESESTWQKESLSICVQPDVINTSVHKISTPHSGGHNSFESPNVKIVSYTDSLMTQTPAQSAPERLMTQTPAQSAPERLLPGSDVKLQNMTAQKSASCFKPAKRVLDFALMEEDDDLDNRVDVLESSKALREGCKYFDSVSLSPEGIDIPEAALQERFSQRACNLIFEDELVNSSTELSSTSNQIEPLLNKSHLCPSFRSHFFQKNVANQTEQVQCFSSSKTSLSSHESDCLDSQKSESTWLKGCTPLSDCLTNPNAERGKQNESLSVCVQPDVINTSVHNSISPPHSVSRSSIESPDMKIVSCTDSLMTQTPAQSAAPGILLPCSDVKLQSMTAEKSTSRFKPAKRVLDFSFTEGNDCLDNRVDVLESSKALREFDCISKLSRGFSEDPKSFDSVSLEVPVNIGYSLEKTNQNQTGLDALDNNISSLVELVNVIDYIFRSVQRTPITKEELLQKIMMNCLDFVEIREAEEQIEILEKLLPDWICKKLVCSGDTMYCVKNALDFDSVRSRLLSNVTEGVE 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01521 779 SUPERFAMILY "Winged helix" DNA-binding domain 50 183 IPR036390 -
Car08g01521 779 Coils Coil 725 745 - -
Car08g01521 779 CDD Cdt1_m 33 204 IPR014939 -
Car08g01521 779 Pfam DNA replication factor Cdt1 C-terminal domain 680 743 IPR032054 -
Car08g01521 779 PANTHER DNA REPLICATION FACTOR CDT1 324 384 IPR045173 GO:0003677|GO:0030174|GO:0071163
Car08g01521 779 PANTHER DNA REPLICATION FACTOR CDT1 7 327 IPR045173 GO:0003677|GO:0030174|GO:0071163
Car08g01521 779 PANTHER DNA REPLICATION FACTOR CDT1 397 772 IPR045173 GO:0003677|GO:0030174|GO:0071163
Car08g01521 779 PANTHER EXPRESSED PROTEIN 397 772 - -
Car08g01521 779 PANTHER EXPRESSED PROTEIN 324 384 - -
Car08g01521 779 PANTHER EXPRESSED PROTEIN 7 327 - -
Car08g01521 779 Gene3D - 678 777 IPR038090 -
Car08g01521 779 SMART CDT1_2 52 181 IPR014939 -
Car08g01521 779 Pfam DNA replication factor CDT1 like 52 116 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01521 Car-Chr8 24240133 24247439 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01521 686 770 Core DNA Replication Machinery Family AT3G54710 42.353 3.19e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01521 K10727 - gmx:102670055 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01521 08 24240133 24247439 Car08g01521 08 24240133 24247439 ECH