Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01493 ATGATAAAAAAAACACCAACCTTATCATCATATATGAAACTACCATTTCACTTTGTTCTAACAACTTTGTTCCTATTATTATTAAACCATGCAAATTCTCAATCTCCTCAACTTTATTATAATCAAGAACATAAACTCTTATTAAACATTAAACAATACCTTCAAAATCAAAATCAAAACCCTTCTTTTCTTAGCCATTGGATTCCATCAAATTCCAATCACTGTTCTTGGAATGAAATTACTTGCACAAATGATTCTGTCACTGGAATCACTCTATCCAAAATCAACATCACAAAAACAATACCACCTTTCATTTGTGATCTCAAAAACCTTACACATGTTGATTTCAGCTTCAACTTCATCCCTGAGAATAATCTTGTAGGAAGAATACCACAGGATTTTGAGAAGCTTCAAAGTTTGACATGGTTGAGTTTGTCACTCAATAGTTTATCAGGTGAAATACCAGAAAGATTGGGCCTTTTTCGATTTCTTGTCGATTTTCGTGTGTTTTCCAATAAGTTATCAGGTACTATTCCTACTGAATTTGGTCGCTATTCGAGGCTGAAAACCTTTGTGATTTCATCGAATAGTCTTGTTGGAAATTTACCTGAAAATTTATGCTATCATGGTGAGTTACTTAATTTGACAGTTTTTGAAAATAATCTTAGCGGCAAGTTGCCAGAATCGTTAGGAAATTGTGGTAGCTTGTTGGATTTGAAAATCTACAACAATGAGTTTTCTGGTACTATTCCTAGTGGTCTTTGGACATCTTTCAAATTGTCAAATTTCATGGTAAGTAATAACAAATTCACCGGCGTGATTCCGGAAAAGTTGTCTTTAAAAATTTCGCGGTTCGAGATAGGTAACAATCAATTTTCGGGTAGAATTCCAAATGCAGTGTCTGCATGGACTAGTATAGTAGTTTTTGATGCAAGTAAGAATTTGTTAAATGGAAGTATTCCACAAGAGTTAACATCACTTCCAAAGTTAACAACTCTTTTGCTTAATCAAAATCAACTCAATGGTCCAATTCCATCAAATATTATATCATGGAAATCCTTAGTGACTCTTAATTTGAGCCAAAATCAACTTTCCGGTCAAATTCCTGATGAAATTGGAAAATTACCTGTCCTTAGTCAACTTGATTTGTCAGAAAATGATCTTTCTGGAGAAATTCCTTCTCAATTTCCTAGAATCACCAATCTTAATCTGTCATATAATAATTTGACCGGTCGAATTCCGAGTGAGTTTCAAAATTCAATTTTTGCAACAAGCTTTTTGGCAAATTCTGGTCTTTGTGCTGATACAAAAGTGCTTAACATCACTTTGTGCACAAATTTTAGTCTTCAAAGGAAAAACAAAGGATCATCATGGTCTATTGGTTTGACCATAAGCCTTGTGATAGTAGCTTTGTTATTAGCTTTTTTGGTTACTTTCTTGATTATCAAAGTTTTCACGAAAAGGAAGCAAGGTTTGGATAATTCATGGAAGCTTATATCCTTTCAGAGGCTAAGTTTCAACGAATCAAGCATCATTTCGTCGATGACAGAACATAATATTATTGGCAGCGGTGGTTACGGTACAGTATACCGAGTCGACGTCAACGGTTTAGGTTATGTTGCTGTGAAAAAGATATGGAATAACAGAAAGTTAGACAGTAAACTCATAAGCTCGTTTCGCGCGGAAGTAAAAATACTAAGCAATATTCGTCATAACAACATTGTGAGATTGATGTGTTGTATATCTAATAATGATGATTGTATGCTTCTTGTGTATGAGTATTTGGAAAAACATAGTTTAGATAAGTGGCTGCACATGAAGAATAAGTCATCATCATCAACATCAACTTTGGTGCAAAATGTGATTCTTGATTGGCCAAAGAGGTTGAAAATAGCAATTGGTGCTGCTCAAGGTTTGAGCTATATGCATCATGATTGTTCACCACCTATTGTTCATAGAGATGTTAAAACAAGTAACATACTTTTGGATGCTCAATTCAATGCAAAAGTTGCTGATTTTGGACTTGCTAGGATTTTAATCAAACCTGAGGAACTTAACACAATGTCAGCTGTGATTGGCTCATTTGGCTACATTGCTCCAGAATATGTTCAAACAACAAGAGTAAGTGAAAAGATTGATGTGTTTAGCTTTGGAGTTATCCTATTGGAACTAACAACTGGTAAAGAAGCTAACTATGGAGATCAACACTCGTCGCTTTCAGAGTGGGCGTGGCGACAAGTTTTGTTAGGAATCAATGTAGAAGAGTTGTTAGACAAAGATGTTATGGAAGGTAGTTACTTGGATGAAATGTGTACAGTTTTCAAACTTGGTGTCATGTGTACTGCAACATTGCCTTCTAGTAGACCTTCAATGAAAGAAGTGTTGCAGCTATTGCTTAACTTTGCAGAACCATTAGTTTATGGAGAGAAGAAAGTTGGCCACTACTATGATGTTGATCCTCTTCTTAAGGATTCAAAAAGTGACACTAGGTTGGATGTTGATGATATGTAA 2511 0.3481 MIKKTPTLSSYMKLPFHFVLTTLFLLLLNHANSQSPQLYYNQEHKLLLNIKQYLQNQNQNPSFLSHWIPSNSNHCSWNEITCTNDSVTGITLSKINITKTIPPFICDLKNLTHVDFSFNFIPENNLVGRIPQDFEKLQSLTWLSLSLNSLSGEIPERLGLFRFLVDFRVFSNKLSGTIPTEFGRYSRLKTFVISSNSLVGNLPENLCYHGELLNLTVFENNLSGKLPESLGNCGSLLDLKIYNNEFSGTIPSGLWTSFKLSNFMVSNNKFTGVIPEKLSLKISRFEIGNNQFSGRIPNAVSAWTSIVVFDASKNLLNGSIPQELTSLPKLTTLLLNQNQLNGPIPSNIISWKSLVTLNLSQNQLSGQIPDEIGKLPVLSQLDLSENDLSGEIPSQFPRITNLNLSYNNLTGRIPSEFQNSIFATSFLANSGLCADTKVLNITLCTNFSLQRKNKGSSWSIGLTISLVIVALLLAFLVTFLIIKVFTKRKQGLDNSWKLISFQRLSFNESSIISSMTEHNIIGSGGYGTVYRVDVNGLGYVAVKKIWNNRKLDSKLISSFRAEVKILSNIRHNNIVRLMCCISNNDDCMLLVYEYLEKHSLDKWLHMKNKSSSSTSTLVQNVILDWPKRLKIAIGAAQGLSYMHHDCSPPIVHRDVKTSNILLDAQFNAKVADFGLARILIKPEELNTMSAVIGSFGYIAPEYVQTTRVSEKIDVFSFGVILLELTTGKEANYGDQHSSLSEWAWRQVLLGINVEELLDKDVMEGSYLDEMCTVFKLGVMCTATLPSSRPSMKEVLQLLLNFAEPLVYGEKKVGHYYDVDPLLKDSKSDTRLDVDDM 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01493 836 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 17 123 - -
Car08g01493 836 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 123 829 - -
Car08g01493 836 CDD STKc_IRAK 521 798 - -
Car08g01493 836 Pfam Leucine rich repeat N-terminal domain 42 82 IPR013210 -
Car08g01493 836 Gene3D Ribonuclease Inhibitor 42 162 IPR032675 -
Car08g01493 836 ProSitePatterns Protein kinases ATP-binding region signature. 521 544 IPR017441 GO:0005524
Car08g01493 836 ProSitePatterns Serine/Threonine protein kinases active-site signature. 650 662 IPR008271 GO:0004672|GO:0006468
Car08g01493 836 SMART serkin_6 515 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g01493 836 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 17 123 - -
Car08g01493 836 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 123 829 - -
Car08g01493 836 Gene3D Transferase(Phosphotransferase) domain 1 595 809 - -
Car08g01493 836 SUPERFAMILY Protein kinase-like (PK-like) 510 798 IPR011009 -
Car08g01493 836 Gene3D Phosphorylase Kinase; domain 1 497 594 - -
Car08g01493 836 Pfam Protein kinase domain 517 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g01493 836 ProSiteProfiles Protein kinase domain profile. 515 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car08g01493 836 SUPERFAMILY RNI-like 90 421 - -
Car08g01493 836 Gene3D Ribonuclease Inhibitor 171 440 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01493 Car-Chr8 23876456 23880217 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01493 90 835 Receptor kinase-like Gene Family AT5G25930 48.837 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Car08g01493 Pkinase 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01493 - K00924 gmx:100813894 1033.09