Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01488 ATGGCAACTCGTAGGTATGCTTTTGGAAGAGCTGATGAGGCTACACATCCTGATTCAATTAGAGCAACTATAGCTGAATTTGCATCCACTTTCATCTTTGTCTTTGCTGGAGAAGGATCTGGCCTTGCTTTGGTTAAGATTTACCAAGACTCAGCATTCTCAGCTGGTGAACTGTTGGCAACAGCACTTGCACATGCTTTTGCACTATTTGCTGCTGTGTCTGCTAGTATGCATGTATCTGGTGGTCATATCAACCCAGCAGTTACATTTGGTGCTCTCATTGGTGGCAGAATCTCTGTTCTTAGAGCTGTCTACTACTGGATTGCTCAACTTCTTGGTGCTGTTGTTGCTGCTCTCTTGCTTAGGCTTGTCACTAATAACATGAGACCAGCAGGGTTTCATGTAGGAGATGGTATTGGTTCAGGACATGCACTTATACTTGAGATAATAATGACATTTGGGCTAATGTACACAGTATATGCAACTGCAATTGATCCTAAAAGAGGTACCATTGGTGCTATTGCACCTTTAGCAATTGGACTCATTGTTGGTGCAAATATCCTTGTTGGTGGGGCATTTGATGGAGCATGTATGAACCCTGCTCTTGCTTTTGGGCCTTCTTTGGTTGGCTGGAGATGGCACCAACATTGGATCTTTTGGCTTGGTCCATTCATTGGAGCAGCATTGGCAGCAATCATATATGAATATGTTATTATCCCAACTGAGCCACCTCATGCACACCAGCCTCTGGCTCCTGAAGATTACTAG 768 0.4388 MATRRYAFGRADEATHPDSIRATIAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLATALAHAFALFAAVSASMHVSGGHINPAVTFGALIGGRISVLRAVYYWIAQLLGAVVAALLLRLVTNNMRPAGFHVGDGIGSGHALILEIIMTFGLMYTVYATAIDPKRGTIGAIAPLAIGLIVGANILVGGAFDGACMNPALAFGPSLVGWRWHQHWIFWLGPFIGAALAAIIYEYVIIPTEPPHAHQPLAPEDY 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01488 255 TIGRFAM MIP: MIP family channel proteins 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g01488 255 SUPERFAMILY Aquaporin-like 13 246 IPR023271 -
Car08g01488 255 Gene3D Glycerol uptake facilitator protein. 4 245 IPR023271 -
Car08g01488 255 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 255 - -
Car08g01488 255 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g01488 255 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g01488 255 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g01488 255 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g01488 255 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g01488 255 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g01488 255 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g01488 255 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Car08g01488 255 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Car08g01488 255 PANTHER AQUAPORIN-8 1 255 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01488 Car-Chr8 23826725 23829548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01488 2 255 Major Intrinsic Protein MIP AT1G17810 72.243 2.42e-124 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01488 K09873 - gmx:100817450 441.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01488 08 23826725 23829548 Car08g01488 08 23826725 23829548 ECH