Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01447 ATGAACGTAACCGGAGAAAAACTACTAAACCGTCCTAAGAGAAAACCAACCTTCGATTTCCACACCTTCCCACCACCTTCGGAAGTTAACTTCTCCGGCGAACCATTCCGGACGAATGTACGTTCGTTTCTAACGAAGCACGCGCTTCTCCCTCCACAATCCGCACTTTTCCCTCACTTGCTGACGTGGCAGATCATGTTCAGAATCGGCGGTGACGACTCAAATGCGGTGGTGGAGGATGGACTGGAACCGGTTGTATGCCTTGATGTTGTTGAAGAGGATGTGGCTAGATCTAGATCTGTGTACTGTGATCAGTGCCGAGTTGTTGGTTGGAGTGGACACCCGGTGTGTGGGAAACGTTACCATTTTATCATAAAGGCTGATGGGAGCTCTATTGGTGGGTATCACAAGCCATGCATGTGCTGTGGAGATATCTTGCGTTTGTCAGAATCCAAGTGCAAGTCTTGCAACCATGTGATAAGCACAGATGATGTTGAAGATTGGGTGTACCAACAATTGGAGAGCACTACTCATCTTTTACATGGTGTGGTTCATGCCAATGGTTATGGGCATCTTCTTCGTGTTAATGGAAGAGAAGGAGGCTCAAGATTTCTTTCTGGCTCCCTTATCATGGACTTCTGGGATCGGCTCTGCAAGACACTTGCTGTCAGAAAAGTTAGTGTGATGGATGTTTCAAAGAAATATGGGCTTGAGTACCGTTTGATCCATGCCCTCATGAGGGGACATCCCTGGTATGGTGAATGGGGTTATCAATTTGGCTCTGGTAGCTATGGTCTCACACAGGAAGCATATAAGACTGCTGTTGAAAGCTTGTCCAACTTACCCTTGTCCGTTTTCCTCTCTGAGGGCTGGAAGCCCCACTCTTGTGTGCAAGGCATCATCTCATTTTACCAGTCTTTGTCGGAGCATCAGCTTGTAAATATAAGAGACCTCTTCCGTCTTCTGATGAGTTTGCTTCATGACTCTATCAAGACTTCATCAAAGGCTGAAAGTATCACCTGTAAGAAGCGCAGCTTTGACGCCATGGGAGTGTCATGTTCCTGGGGACAGAGTGATGTGGTACGTGTTGAGGAAGCCATGCTCAGAGTGCTGCGTGCTGTGTCTCGCTCCAATTGGGTGAGCTCACGAGCTCTTAAGGGTTCTGTCTACAAGGTGGCCTCTTCAGAGCTGCTTGATTACTGCCTTGGAGAACTCGGTGGAAAGGTGGTCTTGGGTTCAATGATTGTTAATACCCGACACAATCCTGAGACTGGAGCTTTGGAGTACAGACTTGAGGCTGCAAACAATTCTTGTGATGGAAAAACATCAAACAATTATTCTTTAGGCTCAAAGCGTCCATCTAAAGAGAGCCTCCTATATGACTTGAAATATTTGTACGGGTATTTGCTCAACTCTCCGATGATGCAGAACTGTGTCCCTGAGGGAATACAGATTCCTGTAATGAGCTCAGCTCAGAAACTTCTTAACTGTAAGCAGCTAGTAAAAGATTATAGGCCAGAGATGTTGCCAATGAAAGATTTTTACAAAATACGCTTCTCATGTCACGTGGAACTTATCGACGAAAGTGAAAATCCCACAATTCCAGCAGAACTGGTTGTCCTACCCATAAATGCAACCATATCCGACCTTAAAAACGAAGCAGTAAATGCTTTTGAAGATGTATATCTCATGTTCAGAAGATTTGTAGTCGACGGCTTACTTGGCTATAACGATGTAGATGATTCCACACAAATCAAACTCTTGTTAGGATCAGCAGAAGTGGTTTGCATCCGAGGACGATGCATCAGCAAGAATGGATTGAGCAAGTTCAAAATGGAACGGGGACTTGAGAGGTGGACTGTCGATTGCAGCTGTGGTGCTAAGGATGATGATGGTGAGAGAATGTTGGCTTGTGATAAATGTGGAGTGTGGCAGCATACTATATGTTCTAACATTCATGATTCACAACCTGTTCCCACCCATTTTACTTGTCCAAAATGTAGAAACCCTAATTTGAAACCTAAATCAATTGGGAATTGCAAAGATGAAACTCTGGCTAACATAAGTGGTAGTAGCAGTTGCTTTGGTAAGGGGTTACCAGTGCCTTCTGATGTTCATTGA 2121 0.4498 MNVTGEKLLNRPKRKPTFDFHTFPPPSEVNFSGEPFRTNVRSFLTKHALLPPQSALFPHLLTWQIMFRIGGDDSNAVVEDGLEPVVCLDVVEEDVARSRSVYCDQCRVVGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILRLSESKCKSCNHVISTDDVEDWVYQQLESTTHLLHGVVHANGYGHLLRVNGREGGSRFLSGSLIMDFWDRLCKTLAVRKVSVMDVSKKYGLEYRLIHALMRGHPWYGEWGYQFGSGSYGLTQEAYKTAVESLSNLPLSVFLSEGWKPHSCVQGIISFYQSLSEHQLVNIRDLFRLLMSLLHDSIKTSSKAESITCKKRSFDAMGVSCSWGQSDVVRVEEAMLRVLRAVSRSNWVSSRALKGSVYKVASSELLDYCLGELGGKVVLGSMIVNTRHNPETGALEYRLEAANNSCDGKTSNNYSLGSKRPSKESLLYDLKYLYGYLLNSPMMQNCVPEGIQIPVMSSAQKLLNCKQLVKDYRPEMLPMKDFYKIRFSCHVELIDESENPTIPAELVVLPINATISDLKNEAVNAFEDVYLMFRRFVVDGLLGYNDVDDSTQIKLLLGSAEVVCIRGRCISKNGLSKFKMERGLERWTVDCSCGAKDDDGERMLACDKCGVWQHTICSNIHDSQPVPTHFTCPKCRNPNLKPKSIGNCKDETLANISGSSSCFGKGLPVPSDVH 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01447 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 607 672 IPR013083 -
Car08g01447 706 ProSitePatterns Zinc finger PHD-type signature. 623 667 IPR019786 -
Car08g01447 706 Pfam PHD-finger 623 669 IPR019787 -
Car08g01447 706 CDD PHD_MMD1_like 622 667 - -
Car08g01447 706 SMART PHD_3 622 668 IPR001965 -
Car08g01447 706 SUPERFAMILY FYVE/PHD zinc finger 612 671 IPR011011 -
Car08g01447 706 ProSitePatterns Uncharacterized protein family UPF0054 signature. 181 191 IPR020549 -
Car08g01447 706 PANTHER OS01G0877500 PROTEIN 9 675 - -
Car08g01447 706 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01447 Car-Chr8 23172268 23178280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01447 86 667 PHD Transcription Factor Family AT5G22260 29.968 1.85e-84 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car08g01447 PHD 5.4e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01447 - - gmx:100818189 1011.13