Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01420 ATGGAAGAAAAAGGTATTTTCACTTCTGGGCATGCCCTTACGGTCAATGTGGCTCAAAATTCTGAGCCCACGGAGGAGTTGCCGATGCCAACTCCGGTAACTGCAGCGTCGCCTATGCCGATTTCGTCCTCAATTCCGGTGACCGGGGATTTCTCAGCCTTGAAAAGAGGTAGGGGGAAGCCACGGAAATCAACCAAAAAGCCTTTAATTGTTTATGATTTTAAAGATGATGGAACAACATACTCTCTTGGTTCCGATTTCACACCTCACGAGCTTATAGTGAATTCTGGCGAGGATGTTGCAGACCGAATTTTCCTTCTCTCTAAAGAATTCCCTGCTATATCCCTTCTCTCTGGAAATGGCACTATTTCAAGTGTCAAACTTGTTCAGTCAGATTCTTGTGGTGGCGTTGGGACTTCGAAATTCGAGGGAACTTTTGACCTTTTAACCTTGAATGGCTCATACGTGCCTACATTGGATGGGTTAACAAAGGAGAGAGTTGGTAAGATAACTGTCTCTTTGGCTTATCCAGATGGCCGTGTTTTCGGGGGCGAAGTGGCTGGTCCTTTGATAGCTTCAAGTCCCGTGCAGGTTGTTGCATGGAGTTTTGTTCCTGGTAAGCAACTGGAGCAAAAGAAAGGAAAGAAGATTGTCAATCCTACTTCTCCGGTTGTCCCTCCTGCTTAA 687 0.4585 MEEKGIFTSGHALTVNVAQNSEPTEELPMPTPVTAASPMPISSSIPVTGDFSALKRGRGKPRKSTKKPLIVYDFKDDGTTYSLGSDFTPHELIVNSGEDVADRIFLLSKEFPAISLLSGNGTISSVKLVQSDSCGGVGTSKFEGTFDLLTLNGSYVPTLDGLTKERVGKITVSLAYPDGRVFGGEVAGPLIASSPVQVVAWSFVPGKQLEQKKGKKIVNPTSPVVPPA 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01420 228 Pfam Plants and Prokaryotes Conserved (PCC) domain 89 204 IPR005175 -
Car08g01420 228 Gene3D - 90 219 - -
Car08g01420 228 SUPERFAMILY AF0104/ALDC/Ptd012-like 85 205 - -
Car08g01420 228 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 35 224 IPR039605 GO:0003680
Car08g01420 228 ProSiteProfiles PPC domain profile profile. 84 224 IPR005175 -
Car08g01420 228 CDD DUF296 88 203 IPR005175 -
Car08g01420 228 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 35 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01420 Car-Chr8 22783373 22787561 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01420 22 217 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 42.381 3.05e-42 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01420 - - cam:101509500 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01420 08 22783373 22787561 Car04g00344 04 3553305 3559294 PCT