Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01393 ATGCCTTCACTTCCAATCACTAACGACACCGTTTCAACCGAAAGCCCTAAGCAAAAATCAATgaagaaggagaagaagaaggagaagCTTCTAAACGACGCTGTTTTGGAGAACAGCGAAGTTTCgaagaagagttcgaagaagaggaagaaaggttcagatgaagaagttgaagaggaagtgaagaGTGAAACTAGCTCTGAAGATGGATCTTCTAGAGTGAAAGTgaagaaagataagaagaagaagaaagccaaggttgaagatgatgacgatgaagaggaGGTTGCTGTGGTGAAGAAAGATGACCCGAATGCGGTTACGAATTTTAGAATTTCGGAGCCgttgaagatgaagttgaaggagaagggaattgaGGCTTTGTTTCCGATTCAAGCTATGACTTTTAATACCATTCTTGATGGTTCTGATTTGGTTGGTCGTGCTCGTACTGGTCAGGGTAAAACTCTGGCGTTTGTGTTGCCCATATTAGAGTCATTGACAAATGGTCCGGCTAAATCCGTTAGAAAGACTGGCTATGGGAGAGTCCCAAGTGTCCTTGTGCTTTTACCTACCAGGGAATTGGCCAATCAGGTGTATGCTGACTTTGAAGTATATGGTTCTTCACTGGGATTGGTCGCTTGTGCTGTATATGGTGGAGCTCCATATGGTGCGCAAGAGAGTAAGCTCAGGAGAGGTGTTGATATAGTTATTGGAACACCGGGTCGTGTAAAGGATCATATAGAGAGGGGCAATATTGACCTGAGCCACCTGAAGTTCCGTGTCCTTGATGAGGCAGATGAAATGTTGAGGATGGGTTTTGTTGATGATGTTGAACTCATTCTAGGTAAGGTACAAGATGTTACTAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAAGCTGGGTTAAGCAAATTTCTTCAAAATTTCTGAAAGCAGATAAGCAAACTGCTGATCTTGTTGGGAATGAGAAAATGAAGGCTAGTACCAATGTTAGGCACATTATCCTTCCATGTAATAGTACTGCAAGGGCACAACTTATCCCTGATATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTATATTTACAGAGAAAAAAGAGTCTGCTTCTGAGCTTGCTGGAATGTTGCCTGGTGCAAGAGCTCTCCATGGTGACATTCAGCAATCACAACGTGAGATTACATTGAAAGGTTTTAGGTCTGGGAAATTCATGACATTGGTGGCCACAAATGTGGCCGCTAGGGGTCTTGACATTAATGATGTTCAGTTGATTATTCAGTGTGAACCTCCACGAGATGTAGAAGCTTATATTCATCGATCTGGGAGAACAGGAAGAGCTGGCAATACTGGAGTCGCTGTGATGCTTTATGATCCCAGAAGGTCGAATATATCTAAAATAGAAAGAGAAGCAGGTGTCAAATTTGAACATGTATCTGCTCCTCAGCCTGATGAAATTGCCAAAGCTGTTGGTGGTGAAGCTGCTGAAATGATTACTGAAGTGTCTGATAGTGTTGTTCCGGCTTTCAAATCTGCTGCTGAGGATCTTTTGAATAATTCTGGTCTTTCAGCTGTCGAATTACTTGCAAAAGCTCTTGCTAAATGTGTTGGTTATACTGAGATAAAGAAAAGATCACTTCTTACTTCAATGGAGAATTATGTTACATTACTTCTTGAAGGAGGAAAACCTATGTTCACTCCATCCTTTGCATTTGGAACACTGAGGAGATTCATTCCTGAGGATAAGGTTGATGCAGTGCAAGGCCTCGCTCTCACTGCAGATGGGCAGGGTGCTGTTTTTGATGTACCGGCCAAGGACTTGGATATTTATCTTAATGGTCAGAAGAATGCGGTTAATGTAACCCTAAAGGTTGTTAAAGAATTGCCAAGTTTGCAACAAAGAGAGGAATCTGGAGGGAGAAGATTCggtggtggtggtcgtggattttctggtggaagaggtggtggatatagatttggtgggagaggtggtggtggAAGAAGTTTTGGAGGCAGAGGGGGAGGAAGGAAATGGTAA 2043 0.374 MPSLPITNDTVSTESPKQKSMKKEKKKEKLLNDAVLENSEVSKKSSKKRKKGSDEEVEEEVKSETSSEDGSSRVKVKKDKKKKKAKVEDDDDEEEVAVVKKDDPNAVTNFRISEPLKMKLKEKGIEALFPIQAMTFNTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKSVRKTGYGRVPSVLVLLPTRELANQVYADFEVYGSSLGLVACAVYGGAPYGAQESKLRRGVDIVIGTPGRVKDHIERGNIDLSHLKFRVLDEADEMLRMGFVDDVELILGKVQDVTKVQTLLFSATLPSWVKQISSKFLKADKQTADLVGNEKMKASTNVRHIILPCNSTARAQLIPDIIRCYSSGGRTIIFTEKKESASELAGMLPGARALHGDIQQSQREITLKGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIEREAGVKFEHVSAPQPDEIAKAVGGEAAEMITEVSDSVVPAFKSAAEDLLNNSGLSAVELLAKALAKCVGYTEIKKRSLLTSMENYVTLLLEGGKPMFTPSFAFGTLRRFIPEDKVDAVQGLALTADGQGAVFDVPAKDLDIYLNGQKNAVNVTLKVVKELPSLQQREESGGRRFGGGGRGFSGGRGGGYRFGGRGGGGRSFGGRGGGRKW 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01393 680 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 36 668 - -
Car08g01393 680 CDD GUCT_RH7_like 546 631 - -
Car08g01393 680 CDD SF2_C_DEAD 333 459 - -
Car08g01393 680 MobiDBLite consensus disorder prediction 1 15 - -
Car08g01393 680 Gene3D - 328 556 IPR027417 -
Car08g01393 680 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 136 318 IPR014001 -
Car08g01393 680 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 462 IPR027417 -
Car08g01393 680 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 262 270 IPR000629 -
Car08g01393 680 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 36 668 - -
Car08g01393 680 Gene3D - 7 318 IPR027417 -
Car08g01393 680 MobiDBLite consensus disorder prediction 655 680 - -
Car08g01393 680 MobiDBLite consensus disorder prediction 1 97 - -
Car08g01393 680 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 347 489 IPR001650 -
Car08g01393 680 CDD DEADc 116 313 - -
Car08g01393 680 Pfam DEAD/DEAH box helicase 129 306 IPR011545 GO:0003676|GO:0005524
Car08g01393 680 SMART ultradead3 124 336 IPR014001 -
Car08g01393 680 SMART helicmild6 373 450 IPR001650 -
Car08g01393 680 MobiDBLite consensus disorder prediction 16 75 - -
Car08g01393 680 Pfam GUCT (NUC152) domain 539 634 IPR012562 GO:0003723|GO:0004386|GO:0005524
Car08g01393 680 Gene3D - 557 629 - -
Car08g01393 680 SUPERFAMILY RNA-binding domain, RBD 543 626 IPR035979 GO:0003676
Car08g01393 680 Pfam Helicase conserved C-terminal domain 351 450 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01393 Car-Chr8 22215557 22221024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01393 92 493 Eukaryotic Initiation Factors Gene Family AT3G19760 29.561 1.50e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01393 K16911 - gmx:100805921 904.434