Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01381 ATGGAAGAAAACAAGAAGTTGATTCATAAAGAAACAGAGAGGCAAAGAAGGCAAGAGATGGCTACCCTATGCACCACCCTTAGATCACTTCTTCCTTTAGAATATATTAAGGGAAAACGCTCAATTTCTGATCATGTATATGAGGCTATGAATTACATCAACCATCTACAAAACAATGTGAAGCAATTACAAAGTAAGAAGGAAGAATTAATGAAGATTTCAAATTTGAGTACAAAAGCTCCTCAAAATGGGTCTAGTAGTAATAGTAGTACTACTCATCTTTCACCTTTTGTTATTGTTCAACCTTTCCTTGGAGGACTTGAAATTGTGTGCAGTTATAGCTTCAACAAATGTTTGTTTCCATTGTCAAAAGCTCTAGACTTGTTGATTAAAGAAGGGCTTAATGTGATAAGCACTAATTCCAACAATTTAGATGGAAGATTCATATACACCGTAAGATTAGAGGATCCGATAATGAGAAGCATTGATTACTCTGAACTTCAAACAAAGCTTATCGAAGCAATTTCATCATCAAGTTTGCAAGAGAGTACGTCTGAACATGAAAATAGCCAATATTTTCATAATAACGTAATTTTTTGA 600 0.3383 MEENKKLIHKETERQRRQEMATLCTTLRSLLPLEYIKGKRSISDHVYEAMNYINHLQNNVKQLQSKKEELMKISNLSTKAPQNGSSSNSSTTHLSPFVIVQPFLGGLEIVCSYSFNKCLFPLSKALDLLIKEGLNVISTNSNNLDGRFIYTVRLEDPIMRSIDYSELQTKLIEAISSSSLQESTSEHENSQYFHNNVIF 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01381 199 Coils Coil 53 73 - -
Car08g01381 199 CDD bHLH_AtORG2_like 5 79 - -
Car08g01381 199 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 183 IPR015660 GO:0003700|GO:0006357
Car08g01381 199 Pfam Helix-loop-helix DNA-binding domain 6 57 IPR011598 GO:0046983
Car08g01381 199 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 56 IPR011598 GO:0046983
Car08g01381 199 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 73 IPR036638 GO:0046983
Car08g01381 199 Gene3D - 1 83 IPR036638 GO:0046983
Car08g01381 199 SMART finulus 10 62 IPR011598 GO:0046983
Car08g01381 199 PANTHER TRANSCRIPTION FACTOR 1 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01381 Car-Chr8 22057627 22060071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01381 9 175 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 39.645 1.67e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car08g01381 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01381 - - ccaj:109791323 253.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01381 08 22057627 22060071 Car04g01257 04 12876226 12877358 PCT