Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01374 atgggaagagggagagtagttttagagagaatagagaATAAGATAAACAGACAAGTAACATTTTCAAAGAGAAGAAGTGGATTGTTGAAGAAAGCCTTTGAGCTTTGTGTTCTATGTGATGCTGAAGTTGCTCTCATCATCTTTTCAAGCCGTGGCAAGCTTTTCCAATATAGTAGCACAGATATTAGCAAAATAATTGAAAGGTATCGCCAATGTCGTTACAACAAGTTACAAGCTGCCAACTCATTTGGACATGAATCACAGAACATATACCAGGAGTACTTGAAATTAAAAGGAAAATATGAATCTCTTGATCGCAGGCAGAGGCATTTTCATGGGGAAGAACTCGAAGCACTTAGCATGAAAGAATTGCAGAGCCTCGAGGAACAGCTTGAGTCAACTCTTGCACAAGTTCGACAGCAACAAGATGGTTGTGACTATGGTAGTACCTGTAAAGGCACTCCAACACCCAATTCAATAATACTATGA 489 0.362 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELCVLCDAEVALIIFSSRGKLFQYSSTDISKIIERYRQCRYNKLQAANSFGHESQNIYQEYLKLKGKYESLDRRQRHFHGEELEALSMKELQSLEEQLESTLAQVRQQQDGCDYGSTCKGTPTPNSIIL 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01374 162 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Car08g01374 162 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 142 - -
Car08g01374 162 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car08g01374 162 Coils Coil 121 144 - -
Car08g01374 162 ProSiteProfiles K-box domain profile. 87 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car08g01374 162 PANTHER MADS BOX PROTEIN 1 142 - -
Car08g01374 162 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Car08g01374 162 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Car08g01374 162 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car08g01374 162 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car08g01374 162 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car08g01374 162 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car08g01374 162 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car08g01374 162 Pfam K-box region 85 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01374 Car-Chr8 21748207 21757159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01374 1 139 MADS-box Gene Family AT3G02310 60.714 6.73e-55 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car08g01374 K-box 1.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01374 K09264 - gmx:100793681 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g01250 04 12801344 12804683 Car08g01374 08 21748207 21757159 PCT