Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01358 ATGGATTTTGACGGTGGTAATAAGCGCGTGTATAACCGTCTCGGTGGGCCCACCGGAGGTGATTCTAAGAATCAGAAAGTTTGTTTTCAATGGCAAGCGGGAAAGTGCAGTCGTTATCCATGTCCGTTTTTGCATAGTGAACTGCCTAGTTTTAATGGAAATGGTGCCCCTTCTAAAAGGCCTTATGGTTCTGGTGAAAATTCGAGCTTTTCGGGTCGGCGTGGTGGGGCAAGTTTTAATACgtgggggcgtggtggtggacgtggacgcggtggtggtggtcgtggtggtgtagggggaggtggtggtaggggagttgttgtgagtggtgATAGAGTTTGTACTTATTGGATTCAAGGAAATTGTAGTTATGGTGAGAGGTGTAAGTTTCTTCACTCTTGGAGTTTAGGGGATGGTTTTTCTTTGTTGACTCAGCTTGAAGGGCACAAGAAGGTTGTGAGTGGAATTGCTATGCCCTCTGGTTCAGATAAGCTTTATACTGGAAGTACTGATGAGACTGTAAGGGTTTGGGACTGCCAGTCTGGACAGTGTATAGCTGTGATCAATCTTGGGGGTGAAGTTGGTTGTATGATCAGTGAAGGTCCCTGGGTTTTTGTTGGCATACCCAATTTTGTTAAGGCCTGGAACACACAAAATTCAATGGAGCTAAGTCTAAATGGCCCTGTCGGACAAGTTTATGCACTTGTGGTGATTAATGATATGCTCTTTGCTGGTACGCAGGATGGATCTATATTGGTATGGAAGTTTAATGTAGTTGCCAACTGTTTTGAGCCAGCTGCATCACTTAAAGGTCATTCCCGTGGTGTTGTTTCATTAGTTGTTGGAGCTAATAGACTTTATTCTGGTTCTATGGACAATACAATTAGAGTCTGGAACCTTGAAACCTTGCAGTGTATACAGACACTAACGGGGCATACGTCTGTTGTGATGTCTGTTCTTTGCTGGGATCAGTTCCTGCTATCTTGTTCATTAGACAAAACAGTGAAGGTATGGTTTGCTACAGAAGGTGGGAATTTGGAAGTGACATATACTCATACTGAAGAACATGTATGGTATAGTCACCCTATGTGGGATGCATGA 1101 0.3933 MDFDGGNKRVYNRLGGPTGGDSKNQKVCFQWQAGKCSRYPCPFLHSELPSFNGNGAPSKRPYGSGENSSFSGRRGGASFNTWGRGGGRGRGGGGRGGVGGGGGRGVVVSGDRVCTYWIQGNCSYGERCKFLHSWSLGDGFSLLTQLEGHKKVVSGIAMPSGSDKLYTGSTDETVRVWDCQSGQCIAVINLGGEVGCMISEGPWVFVGIPNFVKAWNTQNSMELSLNGPVGQVYALVVINDMLFAGTQDGSILVWKFNVVANCFEPAASLKGHSRGVVSLVVGANRLYSGSMDNTIRVWNLETLQCIQTLTGHTSVVMSVLCWDQFLLSCSLDKTVKVWFATEGGNLEVTYTHTEEHVWYSHPMWDA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01358 366 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 356 - -
Car08g01358 366 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 302 - -
Car08g01358 366 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 178 - -
Car08g01358 366 ProSiteProfiles Zinc finger C3H1-type profile. 109 135 IPR000571 GO:0046872
Car08g01358 366 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 187 IPR001680 GO:0005515
Car08g01358 366 PANTHER - 1 356 IPR044715 -
Car08g01358 366 MobiDBLite consensus disorder prediction 61 76 - -
Car08g01358 366 ProSitePatterns Trp-Asp (WD) repeats signature. 286 300 IPR019775 -
Car08g01358 366 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 308 IPR001680 GO:0005515
Car08g01358 366 Gene3D - 223 361 IPR015943 GO:0005515
Car08g01358 366 Gene3D - 106 222 IPR015943 GO:0005515
Car08g01358 366 SMART WD40_4 218 255 IPR001680 GO:0005515
Car08g01358 366 SMART WD40_4 262 299 IPR001680 GO:0005515
Car08g01358 366 SMART WD40_4 302 339 IPR001680 GO:0005515
Car08g01358 366 SMART WD40_4 139 178 IPR001680 GO:0005515
Car08g01358 366 Pfam CCCH-type zinc finger 112 132 IPR041367 -
Car08g01358 366 Pfam WD domain, G-beta repeat 142 178 IPR001680 GO:0005515
Car08g01358 366 Pfam WD domain, G-beta repeat 304 338 IPR001680 GO:0005515
Car08g01358 366 Pfam WD domain, G-beta repeat 265 299 IPR001680 GO:0005515
Car08g01358 366 SUPERFAMILY WD40 repeat-like 131 352 IPR036322 GO:0005515
Car08g01358 366 MobiDBLite consensus disorder prediction 55 102 - -
Car08g01358 366 ProSiteProfiles Zinc finger C3H1-type profile. 22 48 IPR000571 GO:0046872
Car08g01358 366 SMART c3hfinal6 110 134 IPR000571 GO:0046872
Car08g01358 366 SMART c3hfinal6 23 47 IPR000571 GO:0046872
Car08g01358 366 PRINTS G protein beta WD-40 repeat signature 286 300 IPR020472 -
Car08g01358 366 PRINTS G protein beta WD-40 repeat signature 326 340 IPR020472 -
Car08g01358 366 PRINTS G protein beta WD-40 repeat signature 165 179 IPR020472 -
Car08g01358 366 SUPERFAMILY CCCH zinc finger 112 133 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01358 Car-Chr8 21235186 21239765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01358 136 310 Eukaryotic Initiation Factors Gene Family AT2G46290 23.980 4.09e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car08g01358 WD40 0.00042 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01358 - - mtr:MTR_6g465150 632.098