Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01356 ATGGCCTCTGTAACAACAACAACACTGTGCCATTGTCACCTTCCCCTTTCTTCATCCTTCACAATTCCAAAACCAATacactcactctcactctccccctcaacgcgtgctctcattcgtccctttcacttccaattccaatcaaaatcaaaatccatatcatcatcatcatcTCGTTGTCTTATCTCACAACCGCCACGTGCTTATGTCACAGGACCAGCATCCGACCCGAATATATCCGAACCGGATCCGAAGCTCCACGGGTCACTTCAAGAGAAGATTGAACCGCCAAGTGTTATAACATGGGAGCTTCTCTCTATGCTTCTTACCAAACACAAACTTCGTCTTGCTCTTTGCGTTGCATCTCTCTTTTCCTGCACCGCCTGTACCTTATCCATGCCCATTTTTTCCGGGCGGTTTTTCGAAATTCTTATTGGTGTTAGACCGGAGCCGTTGTGGAGTCTTCTCAGTAAAATGGGAGTTCTATATGCTCTAGAGCCACTTTTAACTGTTGTTTTTGTTATAAACATGAACATAGTGTGGGAGAGTGTTATGTCAAAACTAAGAGCTCAGATCTTTGGAAGAATATTGATTCAGAAGGTTGAGTTTTTTGACAAATACAAGGTTGGTGAACTCACTGGTTTGTTAACAGCTGATTTGGGTTCTCTAAAAGATATTGTCAGTGATAATGTTTCAAGGGATCGTGGATTCAGGGCATTATCTGAGGTCACTGGAACATTATTCATACTTTTTTCTTTATCCCCTCAACTTGCTCCAATTCTGGCTGTTCTGATGATCGCGGTTTCCATTTCAATCGCTGTCTACAAGAGATCAACTTTGCCTGTTTTTAAATCACATGGCTTGGCCCAAGCATCTATCTCTGATTGCATAGCAGAAACATTTTCTGCTATTCGAACTGTGCGAACGTTCAGTGGCGAAAAGCGCCAAATGTTTATGTTTGCTAACCAGGTTCTATCCTTCAAATCGAGTGGGATAAAGCTCGGGACTTTCAAATCTATAAACGAATCGTTAACGAGAGTTGCTGTTTATATTTCTTTAATTGCATTATATTGTCTTGGAGGAAGCAAAGTAAAGGCGGGTCAACTCTCTGTTGGAACTATGGCATCATTTATTGGATACACTTTCACTTTAACATTCGCCGTTCAAGGATTGGTTAATACTTTTGGAGATCTTCGCGGAACGTTTGCTGCTGTTGAAAGGATCAACTCAGTTTTGTCTGGAGTTCAAGTTGATGATGCACTTGCCTATGGCTTAGAAAGAGAACTGAAACAAAAAGCAGTGAATGATGAAAACTATAAATTGTTCTTCTCTAATGGTTCTGCTGATAAAAACCAAACAAATTATTCGCATTATATGTCAGCGTTAAAAACGTCAAGCAATCTTTTGAGCTTAGCTTGGTCTGGAGATATTTGTCTTGAAGATGTGTATTTTTCTTATCCGTTAAGGCCAGACGTGGAAATTTTAAGCGGCTTAAATTTAACACTAAAATGTGGAACTATAACTGCACTGGTGGGTGCTAGCGGTGCAGGAAAAAGTACAATAGTACAGCTATTATCTCGTTTTTATGAGCCAGCAAGAGGTTGTATAACAGTTGGTGGAGAGGATGTCCGAACATTTGACAAAAGCGAATGGGCCCGGGTTGTCTCTATCGTAAATCAAGAACCTGTTCTGTTTTCGGTGTCTGTTGGAGAAAATATTGCATATGGGCTTCCAGATGACGATGTTTCTAAAGACGACGTGATTAAGGCAGCAAAAGCTGCAAATGCTCATGACTTTATAATTTCACTTCCACAGGGCTACGATACACTTGTTGGTGAGCGCGGAGGCCTACTGAGCGGAGGACAGAGGCAGAGAATAGCCATTGCCCGAGCTCTCCTGAAGAATGCTCCCATTCTTATACTTGATGAGGCTACAAGTGCTCTGGATACTGTCAGCGAGCGCTTGGTCCAAGATGCCCTCAACCATTTAATGAAGGGGAGGACAACATTAGTTATAGCTCACAGATTAAGCACAGTTCAAAATGCCTATCAAATTGCACTCTGTTCAGATGGAAGGGTTGCAGAACTAGGCACCCATTTTGAGTTATTGGCTAAGAAGGGTCAATATGCTTCACTTGTTGGCACTCAAAGGCTTGCATTTGAATAA 2166 0.398 MASVTTTTLCHCHLPLSSSFTIPKPIHSLSLSPSTRALIRPFHFQFQSKSKSISSSSSRCLISQPPRAYVTGPASDPNISEPDPKLHGSLQEKIEPPSVITWELLSMLLTKHKLRLALCVASLFSCTACTLSMPIFSGRFFEILIGVRPEPLWSLLSKMGVLYALEPLLTVVFVINMNIVWESVMSKLRAQIFGRILIQKVEFFDKYKVGELTGLLTADLGSLKDIVSDNVSRDRGFRALSEVTGTLFILFSLSPQLAPILAVLMIAVSISIAVYKRSTLPVFKSHGLAQASISDCIAETFSAIRTVRTFSGEKRQMFMFANQVLSFKSSGIKLGTFKSINESLTRVAVYISLIALYCLGGSKVKAGQLSVGTMASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSVLSGVQVDDALAYGLERELKQKAVNDENYKLFFSNGSADKNQTNYSHYMSALKTSSNLLSLAWSGDICLEDVYFSYPLRPDVEILSGLNLTLKCGTITALVGASGAGKSTIVQLLSRFYEPARGCITVGGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDDDVSKDDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDTVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAYQIALCSDGRVAELGTHFELLAKKGQYASLVGTQRLAFE 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01356 721 SMART AAA_5 504 678 IPR003593 -
Car08g01356 721 PANTHER ABC TRANSPORTER B FAMILY MEMBER 28 47 719 - -
Car08g01356 721 Pfam ABC transporter transmembrane region 118 387 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car08g01356 721 ProSitePatterns ABC transporters family signature. 618 632 IPR017871 GO:0005524
Car08g01356 721 Pfam ABC transporter 495 646 IPR003439 GO:0005524
Car08g01356 721 CDD ABC_MTABC3_MDL1_MDL2 477 716 - -
Car08g01356 721 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 477 715 IPR003439 GO:0005524
Car08g01356 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 469 716 IPR027417 -
Car08g01356 721 Gene3D ABC transporter type 1, transmembrane domain 86 414 IPR036640 GO:0005524|GO:0016021
Car08g01356 721 Gene3D - 475 718 IPR027417 -
Car08g01356 721 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 117 400 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car08g01356 721 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 47 719 IPR039421 -
Car08g01356 721 CDD ABC_6TM_TAP_ABCB8_10_like 122 408 - -
Car08g01356 721 SUPERFAMILY ABC transporter transmembrane region 104 408 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01356 Car-Chr8 21208882 21215129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01356 474 721 Calmodulin-binding Proteins AT2G36910 54.183 3.03e-74 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01356 K05657 - gmx:100791034 1139.41