Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car08g01343 | ATGAATTTCTGGCAGTTGCTTACTCTGCACACAAACCTAGGTGACATCAAATGGGAAATCTTCTGTGACGAGGTTCCTAAAACCTCCGAGAATTTTTTAGCGCTGAGGGGACCCAACTGGTACTGGCAAAGGGGTACTAGTATATGGGGCAAGAAATTCAACGACGAGATAAGAGAATCTTTGAAGCACAATGCAAGGGGAAAATTATCAATGGCTAACAGTGGTCCAAATACTAATGGAAGTCAGTTCTTCATAAGTTCTGCTAAACAGCCACATTGGAATAGACTATATACTGTGTTTGGAAGAGTGATTCATGGATTTGAAGTTATTGATCTCATGGAAAAGACTCTAACTGGGAGAGGAGATCGACCACTTGCAGAGATAATTAAATGA | 393 | 0.4071 | MNFWQLLTLHTNLGDIKWEIFCDEVPKTSENFLALRGPNWYWQRGTSIWGKKFNDEIRESLKHNARGKLSMANSGPNTNGSQFFISSAKQPHWNRLYTVFGRVIHGFEVIDLMEKTLTGRGDRPLAEIIK | 130 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car08g01343 | 130 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 44 | 127 | IPR002130 | GO:0000413|GO:0003755 | |
| Car08g01343 | 130 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 44 | 128 | IPR044666 | - | |
| Car08g01343 | 130 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 7 | 41 | IPR044666 | - | |
| Car08g01343 | 130 | PIRSF | Peptidylpro_ismrse | 42 | 130 | IPR024936 | GO:0003755 | |
| Car08g01343 | 130 | PIRSF | Peptidylpro_ismrse | 2 | 43 | IPR024936 | GO:0003755 | |
| Car08g01343 | 130 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 3 | 44 | 128 | - | - | |
| Car08g01343 | 130 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 3 | 7 | 41 | - | - | |
| Car08g01343 | 130 | Gene3D | - | 4 | 39 | IPR029000 | - | |
| Car08g01343 | 130 | Gene3D | - | 40 | 130 | IPR029000 | - | |
| Car08g01343 | 130 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 3 | 130 | IPR002130 | GO:0000413|GO:0003755 | |
| Car08g01343 | 130 | SUPERFAMILY | Cyclophilin-like | 3 | 128 | IPR029000 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car08g01343 | Car-Chr8 | 20796560 | 20799650 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car08g01343 | 7 | 128 | U-box Gene Family | AT5G67530 | 39.583 | 2.89e-26 | 100 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car08g01343 | K12734 | - | qsu:112008870 | 197.208 |