Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01338 ATGAAAGGTAGACAATTTTCTACTCTTGATATTGGAGCATCAAGTGGTCTTGGTTTGGAAACAACCAGAGTTATTGCTTTGCGTGGTGTTCATGTTGTTATGGCAGTTAGGAATGTGAACAATGGAATGAATATCAGAGAAACTATACTTAAGGAAATTCCTGCTGCTAAAATTGATGTTATGGAATTAGATCTTAGCTCTATGGCATCTGTCAGAAAATTTGCAGCTGTTTTTAACTCCTCTGGGCTTCCACTCAACATTCTAATGCAAGAAATTCTAATAACAATGCAGGGCTTATGGCTACTCCATTCATGCTTTTCCCAAGACAATATTGAATTGCAATTTGCAACCAATCATTTAGGCCATTTTCTGTTGACAAACCTTTTATTAGAGACTGAAAAAAACTATAAGAGAGTATATAGCAGTTATTCTGCTTATGGACAATCAAAGCTTGCGAATATTTTACATGCCGATGAGCTTTCAAGGCGCTTGAAGGGAATGATGGAAATTATCATGCTTTTGAGACTGCAAAACAGGGAGCTTAGAGTATACTATGAAGTTCTTAAAAATGGGCCGGCTGCAGCAGTCAAGAAGTTAGATGCCAGTAAACAGCCTGACGAGGAATTCTTGGCCCAGGTTTCAATGGTATCAAGGCTGAAGCAAGAAATTTTTTTTCACTTGCTTGGATATTGCGTTGATGGAAACTCCTGTATTCTTGCTTATGAATTTACATCTAATGGGTCTCTTCATGTCATTTTACATGGCAGATAG 771 0.3761 MKGRQFSTLDIGASSGLGLETTRVIALRGVHVVMAVRNVNNGMNIRETILKEIPAAKIDVMELDLSSMASVRKFAAVFNSSGLPLNILMQEILITMQGLWLLHSCFSQDNIELQFATNHLGHFLLTNLLLETEKNYKRVYSSYSAYGQSKLANILHADELSRRLKGMMEIIMLLRLQNRELRVYYEVLKNGPAAAVKKLDASKQPDEEFLAQVSMVSRLKQEIFFHLLGYCVDGNSCILAYEFTSNGSLHVILHGR 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01338 256 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 12 167 IPR036291 -
Car08g01338 256 SUPERFAMILY Protein kinase-like (PK-like) 183 256 IPR011009 -
Car08g01338 256 Gene3D - 11 173 - -
Car08g01338 256 Gene3D Phosphorylase Kinase; domain 1 174 243 - -
Car08g01338 256 Pfam short chain dehydrogenase 11 132 IPR002347 -
Car08g01338 256 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 7 135 - -
Car08g01338 256 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 135 165 - -
Car08g01338 256 PANTHER RETINOL DEHYDROGENASE 7 135 - -
Car08g01338 256 PANTHER RETINOL DEHYDROGENASE 135 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01338 Car-Chr8 20472079 20476295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01338 183 254 Receptor kinase-like Gene Family AT4G39400 43.836 2.21e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Car08g01338 adh_short 1.2e-08 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01338 - K19329 gmx:121174911 186.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01338 08 20472079 20476295 Car08g01338 08 20472079 20476295 ECH