Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01329 ATGAGGGAAGATGAATATGAAAGCAGGTCAGGAAGTGAAAATTTTGATGGTGCTTCTGGTGATGATTTAGATGCTGGTGATGATCAACCACAGAATAAGAAGAAGAAATATCATAGACACACTCCTCAACAAATTCAAGAGCTCGAATCATTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGATCAGATCTTAGCAAGAGGCTTGGCTTGGAGAACAAGCAAGTCAAGTTCTGGTTTCAGAATCGTCGAACTCAAATGAAGACGCAACTCGAACGCCATGAGAACATGATTCTTAGGCAGGAAAATGAGAAGCTCCGAGCTGAGAACAGTGTGATGAAGGAAGCTATGGCGAATCCAATATGCAGCAACTGTGGCGGCCCAGCAATTCCCGGTCAGATTTCAATGGAGGAACACCAGATTAGAATTGAAAATGCCCGATTGAAGGAGGAATTGACCCGTGTGTGTACCTTGGCCAACAAGTTTCTAGGCCGACCACTCTCAGCTCTGGCCAACATGGCTCTGCCATCTCCAAATTCCAGTCTTGAACTCGGTATTGGAAGGAATGGTATCGTCTCAGGTTCAAGCAACTTCGGCATGTCCATGCCAATGGGATTTAATATGGGAGATGGTGTTATGGGAACTCCGCCGACACATTCTGGAATGACACATTCTGGAATGAGATCACCTATGGGAATGATGGGAAATGATGCCCAGCAAGAGCGAACTATGCTTATCGATCTTGCAATAGCTGCTATGGATGAACTTATCAAGATGTCTCAACCAGATTGTCCTCTCTGGATGAAGAGTTCAGAAGGTGGGAAGGAAGTGCTGAATCATGAAGAGTATGCAAGGTCTGGTTCGCCTTTCACCAATCCGAAACCGAATGGTTATGTGACCGAAGCTACTAAAGAAACTGGGCTGTTAATCATCAACAGTGTGGCCCTGGTGGAAACATTGTTGGATGCGGATCGGTGGACAGAGATGTTTCCATGTATGATTGCTCGAGCGGTAACCTTGGATGTAATATCTAGCGGCATGGGTGGAAGCAGAAATGGAGCTCTGCAAGTGATGCATTCTGAGATTCAATTGCCTTCTCCATTAGTCCCGGTTCGACAATATAGTGTTCTTAGGTTTTGCAAGCAGCATGCAGAAGGTGTGTGGGTTGTGGTTGATGTTTCGATCGATATCGGTCGTAATACTGCTAATGGAAACCCTTATATGAGCTGTAGGAGACTTCCTTCTGGCTGTGTTTTGCAGGATATGCCGAATGGTTTATGCAAGATTACTTGGGTTGATCATTCTCAATATGATGAAAGTGCTGTACACCAAATCTATCGGCCGTTGGTCAATTCTGGCCTCGCATTTGGCGCTCATAGATGGGTTGCAACTCTCCAAAGGCAGTGTGAGTGCCTTGCAATCCTCATGTCTACCATGCCATCTGAGGACCCCACAGCCATAAATCAAGCTGGTAGGAGAAGCATGTTAAAGCTCGCACAGCGAATGACCGATTACTTTTGGTCAGGAGTTTGTCCTTCGACCGCGTGCAAGTGGGATATCCTTCACATTAGTAACATGGGTAACAGCGACATGAAAATCATGTCCCGTAAACATCAGGATAACTCTGGCGAATCTACCAGCATTGTGCTAAGTGCTGCAACTTCTGTTTGGTTGCCAGTGTCGCGCCAAAGGGTGTTTGATTTCTTGCGCGAGGCTCGGTTGAGAGGTGAGTGGGATGTTTTGACCGGTGGTGGACCAATGCAGGAGATGGTCCACATTCCTAAAGGACAATCACTTGGAAATTCTGTTTGTATCCTCCGCGGCAATAATGCTTCTAATGGAAATGAGGGCAACGTGCTATATCTCCAAGATTCATGGACCGATAGCTCTGGCTCGATGATCGTGTACTCTCCAATCAACATGCAATCCTTGAACATGGTGATGAACGGCGGTGATTCCTCATTCATCTCTCTTTTGCCATCCGGTTTTTCAATTCTTCCAGACGGCCATTCCAACAACAATTGCGTCGGAACTTCAAATGACGGAAGTGGCAACGGCGGCAGCGACAACAATGACAGTGGAGGATGCTTGCTAACAGCCGGAATACAAATGTTGCTCAACAATCTTCAAACAAGTAAGCTCACAATGGAGTCAGTTGATGCTGTTAATGCACTCATCACATGTACCATTCAAAAGGTCAAAGATGCACTTGGAGTTGCATGA 2226 0.4596 MREDEYESRSGSENFDGASGDDLDAGDDQPQNKKKKYHRHTPQQIQELESFFKECPHPDEKQRSDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENMILRQENEKLRAENSVMKEAMANPICSNCGGPAIPGQISMEEHQIRIENARLKEELTRVCTLANKFLGRPLSALANMALPSPNSSLELGIGRNGIVSGSSNFGMSMPMGFNMGDGVMGTPPTHSGMTHSGMRSPMGMMGNDAQQERTMLIDLAIAAMDELIKMSQPDCPLWMKSSEGGKEVLNHEEYARSGSPFTNPKPNGYVTEATKETGLLIINSVALVETLLDADRWTEMFPCMIARAVTLDVISSGMGGSRNGALQVMHSEIQLPSPLVPVRQYSVLRFCKQHAEGVWVVVDVSIDIGRNTANGNPYMSCRRLPSGCVLQDMPNGLCKITWVDHSQYDESAVHQIYRPLVNSGLAFGAHRWVATLQRQCECLAILMSTMPSEDPTAINQAGRRSMLKLAQRMTDYFWSGVCPSTACKWDILHISNMGNSDMKIMSRKHQDNSGESTSIVLSAATSVWLPVSRQRVFDFLREARLRGEWDVLTGGGPMQEMVHIPKGQSLGNSVCILRGNNASNGNEGNVLYLQDSWTDSSGSMIVYSPINMQSLNMVMNGGDSSFISLLPSGFSILPDGHSNNNCVGTSNDGSGNGGSDNNDSGGCLLTAGIQMLLNNLQTSKLTMESVDAVNALITCTIQKVKDALGVA 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01329 741 ProSiteProfiles START domain profile. 239 475 IPR002913 GO:0008289
Car08g01329 741 Coils Coil 85 120 - -
Car08g01329 741 ProSitePatterns 'Homeobox' domain signature. 66 89 IPR017970 GO:0000981|GO:0006355
Car08g01329 741 ProSiteProfiles 'Homeobox' domain profile. 31 91 IPR001356 GO:0003677
Car08g01329 741 CDD homeodomain 34 91 IPR001356 GO:0003677
Car08g01329 741 Pfam START domain 249 472 IPR002913 GO:0008289
Car08g01329 741 SMART START_1 248 472 IPR002913 GO:0008289
Car08g01329 741 Gene3D - 22 107 - -
Car08g01329 741 Gene3D - 291 472 IPR023393 -
Car08g01329 741 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 739 - -
Car08g01329 741 SUPERFAMILY Bet v1-like 491 676 - -
Car08g01329 741 SUPERFAMILY Bet v1-like 242 472 - -
Car08g01329 741 Pfam Homeodomain 34 89 IPR001356 GO:0003677
Car08g01329 741 SUPERFAMILY Homeodomain-like 16 91 IPR009057 -
Car08g01329 741 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 1 739 IPR042160 -
Car08g01329 741 SMART HOX_1 33 95 IPR001356 GO:0003677
Car08g01329 741 MobiDBLite consensus disorder prediction 1 44 - -
Car08g01329 741 CDD START_ArGLABRA2_like 245 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01329 Car-Chr8 20149446 20155396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01329 2 738 Homeobox Transcription Factor Family AT3G61150 55.214 0.0 819
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Car08g01329 START 2.8e-48 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01329 K09338 - gmx:100794400 1039.25