Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01324 ATGGCTCCGCCGCTACCGCCGGTGGAAAATAACGGCGAATCTACCACAGCATCCGTCCTAGAGTCACAGAGATCTATTCCGACGCCGTTTCTCACAAAAACCTACAACCTCGTCGAAGATCAATCCATCGACGACGTTATTTCATGGAACGACGATGGATCCACCTTCATCGTTTGGAATCCCACCATTTTCGCTAGAGATTTGCTTCCTAAATATTTCAAACACAACAATTTCTCTAGCTTCGTTCGCCAACTCAATACCTATGGATTTAGAAAAGTAGTACCTGATCGTTGGGAATTCTCGAACGAGTTTTTTCGAAGAGGTGATAAACGGCTTCTGTGCGAGATTCAACGCCGGAAGATCTCAACTCCGGCGCCTTCGCCGACGTCTGTTTCTGCTGCTGCAACGGCAGAAACCGCGACAGTTGCGGTTCCTTCCCCGATTCCGCTTACTGTAATACCTACTGCGATGCCGATTATATCACCATCGAACTCCGGTGATGAACAAGTAATATCCTCGAGCTCGTCGCCGTTGCGAGCGCCAGCGGAGCTTCTCGATGAGAACGAGAGATTAAGAAAAGAGAACGTACTTCTGAATAAGGAGCTCGCTGAGATTAAATCACTCTGCAACAATATTTACACTCTTATGTCAAGTTATGCAaacaacaacaacaataataataacCAATCGGACGGTGGCGCGCAAGGAAGTAGAGAGTCCGGGATGACAGCGGTGAAGCCTTTGGATTTGATGCCGGAGGAGGTTAAGCGAGGCTCCGGCGTGAAAGAGATGAATCCGAAGCTGTTTGGTGTTGCGATTGGAGTAAAACGAACAAGAGAAAACGGTTGTGAAAGTGGAGAAGATACACTGTTGAGGCTACATCAACCTGGTTCTACGGACGTGAAATCAGAGCCGTTGGATTGTCAGTATCATCGTGATAACAAGCAAACGCCGTGGTTGAACCGGTGTCGTAGAGCGAATCAGAGTTTATGTAAATGA 999 0.4675 MAPPLPPVENNGESTTASVLESQRSIPTPFLTKTYNLVEDQSIDDVISWNDDGSTFIVWNPTIFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNEFFRRGDKRLLCEIQRRKISTPAPSPTSVSAAATAETATVAVPSPIPLTVIPTAMPIISPSNSGDEQVISSSSSPLRAPAELLDENERLRKENVLLNKELAEIKSLCNNIYTLMSSYANNNNNNNNQSDGGAQGSRESGMTAVKPLDLMPEEVKRGSGVKEMNPKLFGVAIGVKRTRENGCESGEDTLLRLHQPGSTDVKSEPLDCQYHRDNKQTPWLNRCRRANQSLCK 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01324 332 Gene3D - 22 120 IPR036388 -
Car08g01324 332 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 317 IPR027725 -
Car08g01324 332 PRINTS Heat shock factor (HSF) domain signature 30 53 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g01324 332 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g01324 332 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g01324 332 Coils Coil 188 208 - -
Car08g01324 332 SUPERFAMILY "Winged helix" DNA-binding domain 27 119 IPR036390 -
Car08g01324 332 Pfam HSF-type DNA-binding 30 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g01324 332 MobiDBLite consensus disorder prediction 1 21 - -
Car08g01324 332 SMART hsfneu3 26 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g01324 332 ProSitePatterns HSF-type DNA-binding domain signature. 69 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car08g01324 332 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 12 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01324 Car-Chr8 19953154 19955069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01324 6 331 HSF AT5G62020 47.701 5.49e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Car08g01324 HSF_DNA-bind 1.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01324 K09419 - gmx:100812267 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01324 08 19953154 19955069 Car04g01221 04 12492677 12494159 PCT