Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car08g01316 ATGGAACAACAACAACATTATAGAAGAATGGTTATATTGGGAGAAAATGAAAGAGTCACTATTGAATTGTTTTATCCTATTATCAACGGTTTTTATGAAATGATTCCTACTATTCCTGTTAATAGAAACATCATTTTCTCACATATGTGTATCCAAGATGGTCGCTATTTTCTTTTTGAAAGCAACAACAACGAGTTTCTTCTTAGAATAAAAACTCAAGATATCATACCAATTTATGGTCAAGGTGGCCACTACGTTATTGGAGAAAATAACGTCAATCAACTTAATCAAATTCCAACACAAAGAACAAATGTCGAAGCTACCCGATGCTCTGTTCAGAATCTTGAAAGAATTACAATTGATGAAGAAACTACTGCTGATAATTTAACATGTTCCATATGCCTTGAGGAGTTTTTACTTGGATCGGAAGCAATTCATTTGTCTAGTACATGTTCACACATTTATCATCAAAATTGTATTATAAGGTGGCTCATTAGATCAAACACATGTCCTTTGTGTCGTAGACCTATCTCATGTATTCTCTTGTTTTCTTAA 555 0.3261 MEQQQHYRRMVILGENERVTIELFYPIINGFYEMIPTIPVNRNIIFSHMCIQDGRYFLFESNNNEFLLRIKTQDIIPIYGQGGHYVIGENNVNQLNQIPTQRTNVEATRCSVQNLERITIDEETTADNLTCSICLEEFLLGSEAIHLSSTCSHIYHQNCIIRWLIRSNTCPLCRRPISCILLFS 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car08g01316 184 SMART ring_2 131 173 IPR001841 -
Car08g01316 184 CDD Peptidase_S24_S26 34 91 - -
Car08g01316 184 CDD RING-H2_PA-TM-RING 130 174 - -
Car08g01316 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 179 IPR013083 -
Car08g01316 184 SUPERFAMILY RING/U-box 111 179 - -
Car08g01316 184 ProSiteProfiles Zinc finger RING-type profile. 131 174 IPR001841 -
Car08g01316 184 Pfam Ring finger domain 130 174 IPR001841 -
Car08g01316 184 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 92 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car08g01316 Car-Chr8 19735086 19735640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car08g01316 74 174 C3H Transcription Factor Family AT5G01980 36.190 1.09e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car08g01316 - K11982 cam:101490108 92.0485